Hb_007181_070

Information

Type -
Description -
Location Contig7181: 141483-145439
Sequence    

Annotation

kegg
ID rcu:RCOM_0934840
description alpha-galactosidase/alpha-n-acetylgalactosaminidase, putative (EC:3.2.1.22)
nr
ID XP_012091553.1
description PREDICTED: alpha-galactosidase-like [Jatropha curcas]
swissprot
ID Q8RX86
description Alpha-galactosidase 2 OS=Arabidopsis thaliana GN=AGAL2 PE=1 SV=1
trembl
ID A0A067JN27
description Alpha-galactosidase OS=Jatropha curcas GN=JCGZ_21395 PE=3 SV=1
Gene Ontology
ID GO:0052692
description alpha-galactosidase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55520: 141645-145546
cDNA
(Sanger)
(ID:Location)		 051_I08.ab1: 141651-144080

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007181_070 0.0 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
2 Hb_093458_050 0.1144422602 - - glutathione reductase [Hevea brasiliensis]
3 Hb_011953_020 0.1196086963 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
4 Hb_000599_350 0.1228551845 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
5 Hb_000363_200 0.1238463111 - - 40S ribosomal protein S8, putative [Ricinus communis]
6 Hb_005614_050 0.1288090079 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
7 Hb_010560_040 0.1323204923 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
8 Hb_006153_120 0.1343938151 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
9 Hb_003226_280 0.137643608 - - PREDICTED: peter Pan-like protein [Populus euphratica]
10 Hb_032208_060 0.1376950712 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
11 Hb_000742_110 0.1378615357 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
12 Hb_001427_230 0.1398159338 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003551_050 0.1399214478 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
14 Hb_007161_010 0.1426770992 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
15 Hb_003097_210 0.142803853 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
16 Hb_002138_010 0.1430085549 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
17 Hb_002217_230 0.1443826136 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
18 Hb_000122_020 0.1447432262 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
19 Hb_000340_320 0.1466422862 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
20 Hb_005883_100 0.1486731717 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007181_070 Hb_007181_070 Hb_093458_050 Hb_093458_050 Hb_007181_070--Hb_093458_050 Hb_011953_020 Hb_011953_020 Hb_007181_070--Hb_011953_020 Hb_000599_350 Hb_000599_350 Hb_007181_070--Hb_000599_350 Hb_000363_200 Hb_000363_200 Hb_007181_070--Hb_000363_200 Hb_005614_050 Hb_005614_050 Hb_007181_070--Hb_005614_050 Hb_010560_040 Hb_010560_040 Hb_007181_070--Hb_010560_040 Hb_093458_050--Hb_011953_020 Hb_003551_050 Hb_003551_050 Hb_093458_050--Hb_003551_050 Hb_000922_390 Hb_000922_390 Hb_093458_050--Hb_000922_390 Hb_002600_040 Hb_002600_040 Hb_093458_050--Hb_002600_040 Hb_001519_030 Hb_001519_030 Hb_093458_050--Hb_001519_030 Hb_002239_060 Hb_002239_060 Hb_093458_050--Hb_002239_060 Hb_002005_020 Hb_002005_020 Hb_011953_020--Hb_002005_020 Hb_029866_020 Hb_029866_020 Hb_011953_020--Hb_029866_020 Hb_011953_020--Hb_003551_050 Hb_001519_050 Hb_001519_050 Hb_011953_020--Hb_001519_050 Hb_011953_020--Hb_001519_030 Hb_032208_060 Hb_032208_060 Hb_000599_350--Hb_032208_060 Hb_003687_240 Hb_003687_240 Hb_000599_350--Hb_003687_240 Hb_000599_350--Hb_011953_020 Hb_000340_390 Hb_000340_390 Hb_000599_350--Hb_000340_390 Hb_012114_040 Hb_012114_040 Hb_000599_350--Hb_012114_040 Hb_003226_280 Hb_003226_280 Hb_000363_200--Hb_003226_280 Hb_000865_070 Hb_000865_070 Hb_000363_200--Hb_000865_070 Hb_003097_210 Hb_003097_210 Hb_000363_200--Hb_003097_210 Hb_001545_060 Hb_001545_060 Hb_000363_200--Hb_001545_060 Hb_002078_460 Hb_002078_460 Hb_000363_200--Hb_002078_460 Hb_116898_010 Hb_116898_010 Hb_000363_200--Hb_116898_010 Hb_007161_010 Hb_007161_010 Hb_005614_050--Hb_007161_010 Hb_002756_020 Hb_002756_020 Hb_005614_050--Hb_002756_020 Hb_005614_050--Hb_003551_050 Hb_005614_050--Hb_000363_200 Hb_001538_140 Hb_001538_140 Hb_005614_050--Hb_001538_140 Hb_006594_020 Hb_006594_020 Hb_005614_050--Hb_006594_020 Hb_000742_110 Hb_000742_110 Hb_010560_040--Hb_000742_110 Hb_010560_040--Hb_003097_210 Hb_010560_040--Hb_000865_070 Hb_155764_010 Hb_155764_010 Hb_010560_040--Hb_155764_010 Hb_048476_050 Hb_048476_050 Hb_010560_040--Hb_048476_050 Hb_001427_230 Hb_001427_230 Hb_010560_040--Hb_001427_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.12809 1.3733 1.65299 6.12338 4.92778 5.50915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3783 14.1581 17.4958 11.0176 0.597514

CAGE analysis