Hb_007181_080

Information

Type transcription factor
Description TF Family: NAC
Location Contig7181: 153673-155239
Sequence    

Annotation

kegg
ID rcu:RCOM_0934830
description transcription factor, putative
nr
ID XP_002519008.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8GY42
description NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1
trembl
ID B9RZ39
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0934830 PE=4 SV=1
Gene Ontology
ID GO:0005634
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007181_080 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_021418_010 0.1108548967 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
3 Hb_010571_010 0.1234721913 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
4 Hb_002499_020 0.1280203086 - - hevamine-A precursor, putative [Ricinus communis]
5 Hb_046191_010 0.1306130146 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_006120_010 0.1424298149 - - invertase inhibitor [Manihot esculenta]
7 Hb_000099_020 0.1476137075 desease resistance Gene Name: ABC_membrane PREDICTED: uncharacterized protein LOC103431057 [Malus domestica]
8 Hb_001596_030 0.1537713135 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
9 Hb_003469_030 0.1538760427 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
10 Hb_000077_450 0.1547293931 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_164162_020 0.1550711696 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
12 Hb_014115_010 0.1568998062 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_003090_230 0.1597175423 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006538_070 0.1600995966 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
15 Hb_001522_050 0.1624818083 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
16 Hb_000540_030 0.1628898785 - - Chitinase 1 precursor, putative [Ricinus communis]
17 Hb_081282_010 0.1640347535 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
18 Hb_116478_010 0.1662937868 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
19 Hb_025254_020 0.1663002385 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
20 Hb_011452_020 0.1677047081 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_007181_080 Hb_007181_080 Hb_021418_010 Hb_021418_010 Hb_007181_080--Hb_021418_010 Hb_010571_010 Hb_010571_010 Hb_007181_080--Hb_010571_010 Hb_002499_020 Hb_002499_020 Hb_007181_080--Hb_002499_020 Hb_046191_010 Hb_046191_010 Hb_007181_080--Hb_046191_010 Hb_006120_010 Hb_006120_010 Hb_007181_080--Hb_006120_010 Hb_000099_020 Hb_000099_020 Hb_007181_080--Hb_000099_020 Hb_000077_450 Hb_000077_450 Hb_021418_010--Hb_000077_450 Hb_081282_010 Hb_081282_010 Hb_021418_010--Hb_081282_010 Hb_001596_030 Hb_001596_030 Hb_021418_010--Hb_001596_030 Hb_011452_020 Hb_011452_020 Hb_021418_010--Hb_011452_020 Hb_003090_230 Hb_003090_230 Hb_021418_010--Hb_003090_230 Hb_010571_010--Hb_002499_020 Hb_010571_010--Hb_046191_010 Hb_003469_030 Hb_003469_030 Hb_010571_010--Hb_003469_030 Hb_010571_010--Hb_006120_010 Hb_005056_030 Hb_005056_030 Hb_010571_010--Hb_005056_030 Hb_002499_020--Hb_046191_010 Hb_002499_020--Hb_006120_010 Hb_002499_020--Hb_005056_030 Hb_002499_020--Hb_003469_030 Hb_014115_010 Hb_014115_010 Hb_002499_020--Hb_014115_010 Hb_046191_010--Hb_014115_010 Hb_046191_010--Hb_003469_030 Hb_046191_010--Hb_005056_030 Hb_046191_010--Hb_006120_010 Hb_003058_180 Hb_003058_180 Hb_006120_010--Hb_003058_180 Hb_000230_160 Hb_000230_160 Hb_006120_010--Hb_000230_160 Hb_006120_010--Hb_000077_450 Hb_188923_010 Hb_188923_010 Hb_006120_010--Hb_188923_010 Hb_025254_020 Hb_025254_020 Hb_000099_020--Hb_025254_020 Hb_004122_030 Hb_004122_030 Hb_000099_020--Hb_004122_030 Hb_000099_020--Hb_014115_010 Hb_000099_020--Hb_046191_010 Hb_001493_170 Hb_001493_170 Hb_000099_020--Hb_001493_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.551217 0.0902414 2.35861 0.0277938 0.0150543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.10644 0 5.22042 0

CAGE analysis