Hb_007185_040

Information

Type -
Description -
Location Contig7185: 52120-60332
Sequence    

Annotation

kegg
ID rcu:RCOM_1107270
description pyrroline-5-carboxylate reductase, putative (EC:1.5.1.2)
nr
ID XP_012085989.1
description PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
swissprot
ID Q04708
description Pyrroline-5-carboxylate reductase OS=Pisum sativum GN=PROC PE=2 SV=1
trembl
ID A0A067JQV0
description Pyrroline-5-carboxylate reductase OS=Jatropha curcas GN=JCGZ_22478 PE=3 SV=1
Gene Ontology
ID GO:0004735
description pyrroline-5-carboxylate reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55522: 52209-60397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007185_040 0.0 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
2 Hb_172112_020 0.0849649509 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]
3 Hb_001004_140 0.0920648237 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
4 Hb_002596_060 0.0952007759 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010872_050 0.0984194624 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
6 Hb_016734_020 0.0984512339 - - sugar transporter, putative [Ricinus communis]
7 Hb_107298_010 0.0995452831 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
8 Hb_000979_220 0.1020422476 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
9 Hb_021576_010 0.105759243 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
10 Hb_004837_280 0.107622769 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
11 Hb_008053_060 0.1079430203 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
12 Hb_012022_080 0.108998513 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_003777_290 0.109666175 - - polypyrimidine tract binding protein, putative [Ricinus communis]
14 Hb_004096_110 0.1108419133 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
15 Hb_000144_120 0.1137337817 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_003636_080 0.116816752 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
17 Hb_000190_090 0.1197928291 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
18 Hb_000008_090 0.1199246377 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
19 Hb_007257_060 0.1220384538 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
20 Hb_006916_110 0.1220766592 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007185_040 Hb_007185_040 Hb_172112_020 Hb_172112_020 Hb_007185_040--Hb_172112_020 Hb_001004_140 Hb_001004_140 Hb_007185_040--Hb_001004_140 Hb_002596_060 Hb_002596_060 Hb_007185_040--Hb_002596_060 Hb_010872_050 Hb_010872_050 Hb_007185_040--Hb_010872_050 Hb_016734_020 Hb_016734_020 Hb_007185_040--Hb_016734_020 Hb_107298_010 Hb_107298_010 Hb_007185_040--Hb_107298_010 Hb_010422_010 Hb_010422_010 Hb_172112_020--Hb_010422_010 Hb_000979_220 Hb_000979_220 Hb_172112_020--Hb_000979_220 Hb_011282_050 Hb_011282_050 Hb_172112_020--Hb_011282_050 Hb_000190_090 Hb_000190_090 Hb_172112_020--Hb_000190_090 Hb_001369_300 Hb_001369_300 Hb_172112_020--Hb_001369_300 Hb_000008_090 Hb_000008_090 Hb_001004_140--Hb_000008_090 Hb_000144_120 Hb_000144_120 Hb_001004_140--Hb_000144_120 Hb_089140_040 Hb_089140_040 Hb_001004_140--Hb_089140_040 Hb_006468_010 Hb_006468_010 Hb_001004_140--Hb_006468_010 Hb_000174_140 Hb_000174_140 Hb_001004_140--Hb_000174_140 Hb_019840_030 Hb_019840_030 Hb_002596_060--Hb_019840_030 Hb_004837_280 Hb_004837_280 Hb_002596_060--Hb_004837_280 Hb_000122_080 Hb_000122_080 Hb_002596_060--Hb_000122_080 Hb_060980_010 Hb_060980_010 Hb_002596_060--Hb_060980_010 Hb_002259_080 Hb_002259_080 Hb_002596_060--Hb_002259_080 Hb_000161_210 Hb_000161_210 Hb_002596_060--Hb_000161_210 Hb_010872_050--Hb_016734_020 Hb_011674_040 Hb_011674_040 Hb_010872_050--Hb_011674_040 Hb_006916_110 Hb_006916_110 Hb_010872_050--Hb_006916_110 Hb_010872_050--Hb_000979_220 Hb_000345_320 Hb_000345_320 Hb_010872_050--Hb_000345_320 Hb_008206_080 Hb_008206_080 Hb_016734_020--Hb_008206_080 Hb_004096_110 Hb_004096_110 Hb_016734_020--Hb_004096_110 Hb_016734_020--Hb_002596_060 Hb_016734_020--Hb_000979_220 Hb_027760_060 Hb_027760_060 Hb_016734_020--Hb_027760_060 Hb_107298_010--Hb_004837_280 Hb_005489_140 Hb_005489_140 Hb_107298_010--Hb_005489_140 Hb_001900_100 Hb_001900_100 Hb_107298_010--Hb_001900_100 Hb_000159_120 Hb_000159_120 Hb_107298_010--Hb_000159_120 Hb_001019_050 Hb_001019_050 Hb_107298_010--Hb_001019_050 Hb_003777_290 Hb_003777_290 Hb_107298_010--Hb_003777_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95816 11.4912 20.673 15.297 8.68686 7.31085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24259 8.63327 6.07596 32.678 9.92537

CAGE analysis