Hb_007185_050

Information

Type -
Description -
Location Contig7185: 65501-66673
Sequence    

Annotation

kegg
ID fve:101314016
description uncharacterized protein LOC101314016
nr
ID KDP26229.1
description hypothetical protein JCGZ_22475 [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067K386
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22475 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007185_050 0.0 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
2 Hb_001136_040 0.050533072 - - amino acid transporter, putative [Ricinus communis]
3 Hb_000009_280 0.0541166645 - - Calmodulin, putative [Ricinus communis]
4 Hb_004032_290 0.066513719 - - protein binding protein, putative [Ricinus communis]
5 Hb_002874_200 0.0728317797 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
6 Hb_009783_010 0.07286825 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
7 Hb_001898_040 0.0764995306 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_000230_410 0.077041839 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
9 Hb_004650_120 0.0775523969 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
10 Hb_004020_030 0.0818143867 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
11 Hb_000680_060 0.0863641207 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
12 Hb_001136_160 0.0884352469 - - catalytic, putative [Ricinus communis]
13 Hb_000077_250 0.0915935797 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
14 Hb_036520_030 0.0932375507 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
15 Hb_000676_230 0.0963528528 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
16 Hb_000866_130 0.0983816918 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
17 Hb_009070_020 0.0995355625 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
18 Hb_001104_060 0.1000869542 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
19 Hb_002471_130 0.1011005784 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
20 Hb_006977_010 0.1014515402 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_007185_050 Hb_007185_050 Hb_001136_040 Hb_001136_040 Hb_007185_050--Hb_001136_040 Hb_000009_280 Hb_000009_280 Hb_007185_050--Hb_000009_280 Hb_004032_290 Hb_004032_290 Hb_007185_050--Hb_004032_290 Hb_002874_200 Hb_002874_200 Hb_007185_050--Hb_002874_200 Hb_009783_010 Hb_009783_010 Hb_007185_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_007185_050--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_001136_040--Hb_001136_160 Hb_001136_040--Hb_009783_010 Hb_001136_040--Hb_001898_040 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020 Hb_001136_040--Hb_000009_280 Hb_000230_410 Hb_000230_410 Hb_000009_280--Hb_000230_410 Hb_004650_120 Hb_004650_120 Hb_000009_280--Hb_004650_120 Hb_000009_280--Hb_004032_290 Hb_000009_280--Hb_002874_200 Hb_004032_290--Hb_002874_200 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_000676_230 Hb_000676_230 Hb_004032_290--Hb_000676_230 Hb_000395_310 Hb_000395_310 Hb_004032_290--Hb_000395_310 Hb_004032_290--Hb_000230_410 Hb_002874_200--Hb_000230_410 Hb_002388_070 Hb_002388_070 Hb_002874_200--Hb_002388_070 Hb_002874_200--Hb_000395_310 Hb_002874_200--Hb_001136_040 Hb_007904_280 Hb_007904_280 Hb_009783_010--Hb_007904_280 Hb_009783_010--Hb_001898_040 Hb_012132_050 Hb_012132_050 Hb_009783_010--Hb_012132_050 Hb_009783_010--Hb_001136_160 Hb_001898_040--Hb_001136_160 Hb_010962_020 Hb_010962_020 Hb_001898_040--Hb_010962_020 Hb_001898_040--Hb_012132_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.61542 5.12403 17.3993 0 0.0545441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.144576 7.38855

CAGE analysis