Hb_007187_010

Information

Type -
Description -
Location Contig7187: 10239-10550
Sequence    

Annotation

kegg
ID tcc:TCM_018911
description hypothetical protein
nr
ID KDP35623.1
description hypothetical protein JCGZ_09061 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09061 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55530: 10068-10608
cDNA
(Sanger)
(ID:Location)		 003_N20.ab1: 10113-10608 , 010_O22.ab1: 10117-10603 , 014_P22.ab1: 10117-10623 , 021_K12.ab1: 10108-10603 , 036_E02.ab1: 10082-10603 , 039_A19.ab1: 10082-10603 , 042_A23.ab1: 10118-10603 , 044_G11.ab1: 10068-10603 , 047_D02.ab1: 10113-10593 , 048_J10.ab1: 10082-10603

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007187_010 0.0 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
2 Hb_011382_010 0.0215414035 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
3 Hb_009707_020 0.0263698035 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
4 Hb_074312_010 0.0278239833 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
5 Hb_000010_160 0.0300762659 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
6 Hb_001205_220 0.0330806034 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000512_120 0.0337692719 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
8 Hb_163566_020 0.0381362081 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_002328_080 0.0392440944 - - short-chain dehydrogenase, putative [Ricinus communis]
10 Hb_005610_070 0.0396223307 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
11 Hb_005280_020 0.0437438239 - - glycine cleavage system h protein, putative [Ricinus communis]
12 Hb_002014_150 0.0460752711 - - monooxygenase, putative [Ricinus communis]
13 Hb_014056_020 0.0468828697 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000844_080 0.0483833998 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
15 Hb_002743_010 0.0501810479 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000731_150 0.0503370085 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
17 Hb_001775_020 0.0518966771 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
18 Hb_001519_140 0.0529187824 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
19 Hb_001135_310 0.0569270685 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
20 Hb_002965_170 0.0573119019 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]

Gene co-expression network

sample Hb_007187_010 Hb_007187_010 Hb_011382_010 Hb_011382_010 Hb_007187_010--Hb_011382_010 Hb_009707_020 Hb_009707_020 Hb_007187_010--Hb_009707_020 Hb_074312_010 Hb_074312_010 Hb_007187_010--Hb_074312_010 Hb_000010_160 Hb_000010_160 Hb_007187_010--Hb_000010_160 Hb_001205_220 Hb_001205_220 Hb_007187_010--Hb_001205_220 Hb_000512_120 Hb_000512_120 Hb_007187_010--Hb_000512_120 Hb_011382_010--Hb_000010_160 Hb_011382_010--Hb_074312_010 Hb_011382_010--Hb_009707_020 Hb_011382_010--Hb_001205_220 Hb_005610_070 Hb_005610_070 Hb_011382_010--Hb_005610_070 Hb_002328_080 Hb_002328_080 Hb_009707_020--Hb_002328_080 Hb_000844_080 Hb_000844_080 Hb_009707_020--Hb_000844_080 Hb_009707_020--Hb_000010_160 Hb_001775_020 Hb_001775_020 Hb_009707_020--Hb_001775_020 Hb_074312_010--Hb_005610_070 Hb_163566_020 Hb_163566_020 Hb_074312_010--Hb_163566_020 Hb_002014_150 Hb_002014_150 Hb_074312_010--Hb_002014_150 Hb_010288_070 Hb_010288_070 Hb_074312_010--Hb_010288_070 Hb_000010_160--Hb_001205_220 Hb_000010_160--Hb_000844_080 Hb_000010_160--Hb_002328_080 Hb_001519_140 Hb_001519_140 Hb_001205_220--Hb_001519_140 Hb_000731_150 Hb_000731_150 Hb_001205_220--Hb_000731_150 Hb_001205_220--Hb_074312_010 Hb_000333_010 Hb_000333_010 Hb_000512_120--Hb_000333_010 Hb_000512_120--Hb_011382_010 Hb_000512_120--Hb_009707_020 Hb_014056_020 Hb_014056_020 Hb_000512_120--Hb_014056_020 Hb_002743_010 Hb_002743_010 Hb_000512_120--Hb_002743_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.716736 167.861 75.0241 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 222.854

CAGE analysis