Hb_007188_020

Information

Type -
Description -
Location Contig7188: 30752-32367
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb010436mg
description hypothetical protein
nr
ID XP_007214290.1
description hypothetical protein PRUPE_ppb010436mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5WP61
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb010436mg PE=4 SV=1
Gene Ontology
ID GO:0005694
description dna topoisomerase 3-alpha isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007188_020 0.0 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
2 Hb_152554_010 0.0902840845 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
3 Hb_116632_010 0.1041530486 - - unnamed protein product [Vitis vinifera]
4 Hb_032927_010 0.1118382832 - - -
5 Hb_000001_040 0.1231261694 - - unnamed protein product [Coffea canephora]
6 Hb_000812_040 0.1279942113 - - zinc finger family protein [Populus trichocarpa]
7 Hb_005085_030 0.1306889948 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
8 Hb_076875_020 0.1309063714 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_067776_010 0.1349587347 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
10 Hb_000136_180 0.1352209688 - - ribosomal protein S28, putative [Ricinus communis]
11 Hb_106005_010 0.1354068155 - - EG5651 [Manihot esculenta]
12 Hb_010504_030 0.1399197909 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
13 Hb_000007_460 0.1410753014 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
14 Hb_166480_010 0.1420337594 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
15 Hb_005367_010 0.1439650152 - - -
16 Hb_000265_130 0.1447067846 - - -
17 Hb_128998_010 0.1448284642 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
18 Hb_000015_070 0.1448407237 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
19 Hb_003861_040 0.1485029966 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
20 Hb_002482_060 0.1496189996 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_007188_020 Hb_007188_020 Hb_152554_010 Hb_152554_010 Hb_007188_020--Hb_152554_010 Hb_116632_010 Hb_116632_010 Hb_007188_020--Hb_116632_010 Hb_032927_010 Hb_032927_010 Hb_007188_020--Hb_032927_010 Hb_000001_040 Hb_000001_040 Hb_007188_020--Hb_000001_040 Hb_000812_040 Hb_000812_040 Hb_007188_020--Hb_000812_040 Hb_005085_030 Hb_005085_030 Hb_007188_020--Hb_005085_030 Hb_006487_060 Hb_006487_060 Hb_152554_010--Hb_006487_060 Hb_152554_010--Hb_000812_040 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_000176_120 Hb_000176_120 Hb_152554_010--Hb_000176_120 Hb_068014_010 Hb_068014_010 Hb_116632_010--Hb_068014_010 Hb_003581_010 Hb_003581_010 Hb_116632_010--Hb_003581_010 Hb_116632_010--Hb_005085_030 Hb_000265_130 Hb_000265_130 Hb_116632_010--Hb_000265_130 Hb_017462_010 Hb_017462_010 Hb_116632_010--Hb_017462_010 Hb_032927_010--Hb_000812_040 Hb_067776_010 Hb_067776_010 Hb_032927_010--Hb_067776_010 Hb_006502_080 Hb_006502_080 Hb_032927_010--Hb_006502_080 Hb_032927_010--Hb_152554_010 Hb_136731_010 Hb_136731_010 Hb_032927_010--Hb_136731_010 Hb_000001_040--Hb_000265_130 Hb_106005_010 Hb_106005_010 Hb_000001_040--Hb_106005_010 Hb_000001_040--Hb_000176_120 Hb_004117_180 Hb_004117_180 Hb_000001_040--Hb_004117_180 Hb_000001_040--Hb_003581_010 Hb_000812_040--Hb_067776_010 Hb_000812_040--Hb_006502_080 Hb_140291_010 Hb_140291_010 Hb_000812_040--Hb_140291_010 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130 Hb_005679_070 Hb_005679_070 Hb_005085_030--Hb_005679_070 Hb_004060_030 Hb_004060_030 Hb_005085_030--Hb_004060_030 Hb_005085_030--Hb_152554_010 Hb_006663_090 Hb_006663_090 Hb_005085_030--Hb_006663_090 Hb_166480_010 Hb_166480_010 Hb_005085_030--Hb_166480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61407 0.884721 1.04491 5.1683 1.26416 12.652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84972 4.64944 2.17009 2.38584 0.297472

CAGE analysis