Hb_007188_070

Information

Type -
Description -
Location Contig7188: 134899-141399
Sequence    

Annotation

kegg
ID rcu:RCOM_1519060
description prokaryotic DNA topoisomerase, putative (EC:5.99.1.2)
nr
ID XP_002527391.1
description prokaryotic DNA topoisomerase, putative [Ricinus communis]
swissprot
ID C7J0A2
description DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica GN=TOP3A PE=3 SV=1
trembl
ID B9SN22
description DNA topoisomerase (Fragment) OS=Ricinus communis GN=RCOM_1519060 PE=3 SV=1
Gene Ontology
ID GO:0005694
description dna topoisomerase 3-alpha isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55533: 85197-137790 , PASA_asmbl_55534: 138887-141309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007188_070 0.0 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
2 Hb_003362_040 0.0656590653 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
3 Hb_002304_090 0.0663266659 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
4 Hb_011174_090 0.0776630566 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
5 Hb_000645_120 0.0798526333 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
6 Hb_009627_010 0.0801839868 - - Protein dom-3, putative [Ricinus communis]
7 Hb_140171_010 0.0803215866 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
8 Hb_000283_070 0.0830528659 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
9 Hb_001172_010 0.083097729 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
10 Hb_006586_050 0.0836111809 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
11 Hb_002200_130 0.0867091352 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
12 Hb_005532_050 0.0868348767 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
13 Hb_002255_050 0.0890137953 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_000160_040 0.092467226 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
15 Hb_004370_030 0.0937839695 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
16 Hb_000915_050 0.0941744216 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000768_110 0.0943053659 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
18 Hb_000755_030 0.0949447944 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
19 Hb_000538_100 0.095720207 - - conserved hypothetical protein [Ricinus communis]
20 Hb_033187_050 0.0961606449 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]

Gene co-expression network

sample Hb_007188_070 Hb_007188_070 Hb_003362_040 Hb_003362_040 Hb_007188_070--Hb_003362_040 Hb_002304_090 Hb_002304_090 Hb_007188_070--Hb_002304_090 Hb_011174_090 Hb_011174_090 Hb_007188_070--Hb_011174_090 Hb_000645_120 Hb_000645_120 Hb_007188_070--Hb_000645_120 Hb_009627_010 Hb_009627_010 Hb_007188_070--Hb_009627_010 Hb_140171_010 Hb_140171_010 Hb_007188_070--Hb_140171_010 Hb_000915_050 Hb_000915_050 Hb_003362_040--Hb_000915_050 Hb_002200_130 Hb_002200_130 Hb_003362_040--Hb_002200_130 Hb_000244_250 Hb_000244_250 Hb_003362_040--Hb_000244_250 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050 Hb_001172_010 Hb_001172_010 Hb_002304_090--Hb_001172_010 Hb_000538_100 Hb_000538_100 Hb_002304_090--Hb_000538_100 Hb_002304_090--Hb_009627_010 Hb_003935_030 Hb_003935_030 Hb_002304_090--Hb_003935_030 Hb_000510_310 Hb_000510_310 Hb_002304_090--Hb_000510_310 Hb_004994_040 Hb_004994_040 Hb_011174_090--Hb_004994_040 Hb_007592_030 Hb_007592_030 Hb_011174_090--Hb_007592_030 Hb_011174_090--Hb_002304_090 Hb_011174_090--Hb_009627_010 Hb_000109_210 Hb_000109_210 Hb_011174_090--Hb_000109_210 Hb_000283_070 Hb_000283_070 Hb_000645_120--Hb_000283_070 Hb_001140_350 Hb_001140_350 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060 Hb_005730_030 Hb_005730_030 Hb_140171_010--Hb_005730_030 Hb_002255_050 Hb_002255_050 Hb_140171_010--Hb_002255_050 Hb_002928_060 Hb_002928_060 Hb_140171_010--Hb_002928_060 Hb_033834_010 Hb_033834_010 Hb_140171_010--Hb_033834_010 Hb_004204_080 Hb_004204_080 Hb_140171_010--Hb_004204_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97245 1.24537 1.00962 0.910609 1.85892 2.7444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.34832 0.679941 1.52752 1.29354 0.396748

CAGE analysis