Hb_007189_020

Information

Type -
Description -
Location Contig7189: 22229-29103
Sequence    

Annotation

kegg
ID sot:102604542
description uncharacterized LOC102604542
nr
ID XP_012066659.1
description PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007189_020 0.0 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
2 Hb_000330_180 0.197615954 - - -
3 Hb_000917_250 0.262600224 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
4 Hb_000181_040 0.2739111926 transcription factor TF Family: NAC PREDICTED: protein CUP-SHAPED COTYLEDON 2 [Jatropha curcas]
5 Hb_155932_010 0.330931147 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
6 Hb_031089_060 0.337415329 - - -
7 Hb_000866_160 0.3377514557 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
8 Hb_074152_010 0.3409280284 - - -
9 Hb_156635_050 0.3470557538 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
10 Hb_001773_020 0.371361748 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
11 Hb_000487_390 0.3858690885 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
12 Hb_001263_020 0.3882487172 - - -
13 Hb_012656_010 0.3888462698 - - -
14 Hb_058884_010 0.3902760378 - - PREDICTED: barwin-like [Jatropha curcas]
15 Hb_063716_070 0.392582259 - - hypothetical protein PRUPE_ppa020565mg [Prunus persica]
16 Hb_003812_010 0.3937359147 - - -
17 Hb_000563_220 0.3952678288 - - hypothetical protein VITISV_004111 [Vitis vinifera]
18 Hb_149731_010 0.3973686305 - - -
19 Hb_024505_030 0.3992607783 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
20 Hb_002188_100 0.4005202668 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007189_020 Hb_007189_020 Hb_000330_180 Hb_000330_180 Hb_007189_020--Hb_000330_180 Hb_000917_250 Hb_000917_250 Hb_007189_020--Hb_000917_250 Hb_000181_040 Hb_000181_040 Hb_007189_020--Hb_000181_040 Hb_155932_010 Hb_155932_010 Hb_007189_020--Hb_155932_010 Hb_031089_060 Hb_031089_060 Hb_007189_020--Hb_031089_060 Hb_000866_160 Hb_000866_160 Hb_007189_020--Hb_000866_160 Hb_156635_050 Hb_156635_050 Hb_000330_180--Hb_156635_050 Hb_003554_020 Hb_003554_020 Hb_000330_180--Hb_003554_020 Hb_000330_180--Hb_155932_010 Hb_000330_180--Hb_000181_040 Hb_179763_020 Hb_179763_020 Hb_000330_180--Hb_179763_020 Hb_074152_010 Hb_074152_010 Hb_000917_250--Hb_074152_010 Hb_001773_020 Hb_001773_020 Hb_000917_250--Hb_001773_020 Hb_000326_020 Hb_000326_020 Hb_000917_250--Hb_000326_020 Hb_006045_060 Hb_006045_060 Hb_000917_250--Hb_006045_060 Hb_000236_270 Hb_000236_270 Hb_000917_250--Hb_000236_270 Hb_149731_010 Hb_149731_010 Hb_000181_040--Hb_149731_010 Hb_000181_040--Hb_000236_270 Hb_058884_010 Hb_058884_010 Hb_000181_040--Hb_058884_010 Hb_000181_040--Hb_000917_250 Hb_000181_040--Hb_155932_010 Hb_000246_140 Hb_000246_140 Hb_155932_010--Hb_000246_140 Hb_003636_050 Hb_003636_050 Hb_155932_010--Hb_003636_050 Hb_136856_010 Hb_136856_010 Hb_155932_010--Hb_136856_010 Hb_021068_020 Hb_021068_020 Hb_155932_010--Hb_021068_020 Hb_009066_010 Hb_009066_010 Hb_155932_010--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_155932_010--Hb_068347_020 Hb_031089_060--Hb_000866_160 Hb_000487_390 Hb_000487_390 Hb_031089_060--Hb_000487_390 Hb_001263_020 Hb_001263_020 Hb_031089_060--Hb_001263_020 Hb_012656_010 Hb_012656_010 Hb_031089_060--Hb_012656_010 Hb_003812_010 Hb_003812_010 Hb_031089_060--Hb_003812_010 Hb_001754_220 Hb_001754_220 Hb_031089_060--Hb_001754_220 Hb_000866_160--Hb_000487_390 Hb_000866_160--Hb_001263_020 Hb_000866_160--Hb_012656_010 Hb_000866_160--Hb_003812_010 Hb_000866_160--Hb_001754_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0724765 0.0297878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0465135 0 0 0

CAGE analysis