Hb_007192_020

Information

Type -
Description -
Location Contig7192: 8315-9354
Sequence    

Annotation

kegg
ID rcu:RCOM_1508420
description hypothetical protein
nr
ID XP_012079964.1
description PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
swissprot
ID Q9FGS5
description High-affinity nitrate transporter 3.1 OS=Arabidopsis thaliana GN=NRT3.1 PE=1 SV=1
trembl
ID A0A067K4F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11393 PE=4 SV=1
Gene Ontology
ID GO:0005737
description high-affinity nitrate transporter -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55538: 8238-9340 , PASA_asmbl_55539: 8252-9326
cDNA
(Sanger)
(ID:Location)		 028_L04.ab1: 8240-9174 , 048_A01.ab1: 8240-9212

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007192_020 0.0 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
2 Hb_010984_020 0.0817477238 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
3 Hb_000977_290 0.1096640356 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
4 Hb_000094_290 0.1253557875 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
5 Hb_000959_300 0.12915161 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
6 Hb_000300_090 0.1314040858 - - catalytic, putative [Ricinus communis]
7 Hb_009913_040 0.1318476815 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
8 Hb_000684_310 0.1346566914 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
9 Hb_002053_050 0.1403770129 - - Kinesin heavy chain, putative [Ricinus communis]
10 Hb_000173_060 0.1424299837 - - Dual specificity protein phosphatase, putative [Ricinus communis]
11 Hb_006006_060 0.1424543342 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
12 Hb_000510_150 0.1426665178 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
13 Hb_027445_030 0.1445480188 - - F-box/LRR-repeat protein, putative [Ricinus communis]
14 Hb_000860_060 0.1454462521 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
15 Hb_003540_080 0.1465276755 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_002488_010 0.1469180466 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
17 Hb_000035_220 0.1469408336 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
18 Hb_020586_010 0.1480637352 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
19 Hb_001969_140 0.1497139579 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
20 Hb_002942_230 0.1509504519 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]

Gene co-expression network

sample Hb_007192_020 Hb_007192_020 Hb_010984_020 Hb_010984_020 Hb_007192_020--Hb_010984_020 Hb_000977_290 Hb_000977_290 Hb_007192_020--Hb_000977_290 Hb_000094_290 Hb_000094_290 Hb_007192_020--Hb_000094_290 Hb_000959_300 Hb_000959_300 Hb_007192_020--Hb_000959_300 Hb_000300_090 Hb_000300_090 Hb_007192_020--Hb_000300_090 Hb_009913_040 Hb_009913_040 Hb_007192_020--Hb_009913_040 Hb_010984_020--Hb_000977_290 Hb_006006_060 Hb_006006_060 Hb_010984_020--Hb_006006_060 Hb_004710_020 Hb_004710_020 Hb_010984_020--Hb_004710_020 Hb_010984_020--Hb_000959_300 Hb_000510_150 Hb_000510_150 Hb_010984_020--Hb_000510_150 Hb_000977_290--Hb_000959_300 Hb_002488_010 Hb_002488_010 Hb_000977_290--Hb_002488_010 Hb_000977_290--Hb_004710_020 Hb_001140_180 Hb_001140_180 Hb_000977_290--Hb_001140_180 Hb_000173_060 Hb_000173_060 Hb_000094_290--Hb_000173_060 Hb_000094_290--Hb_000300_090 Hb_000622_350 Hb_000622_350 Hb_000094_290--Hb_000622_350 Hb_000889_100 Hb_000889_100 Hb_000094_290--Hb_000889_100 Hb_011926_040 Hb_011926_040 Hb_000094_290--Hb_011926_040 Hb_010003_010 Hb_010003_010 Hb_000094_290--Hb_010003_010 Hb_000959_300--Hb_002488_010 Hb_001411_130 Hb_001411_130 Hb_000959_300--Hb_001411_130 Hb_001969_140 Hb_001969_140 Hb_000959_300--Hb_001969_140 Hb_002942_230 Hb_002942_230 Hb_000959_300--Hb_002942_230 Hb_003847_040 Hb_003847_040 Hb_000959_300--Hb_003847_040 Hb_000167_040 Hb_000167_040 Hb_000959_300--Hb_000167_040 Hb_000035_220 Hb_000035_220 Hb_000300_090--Hb_000035_220 Hb_000300_090--Hb_000510_150 Hb_014361_060 Hb_014361_060 Hb_000300_090--Hb_014361_060 Hb_000503_020 Hb_000503_020 Hb_000300_090--Hb_000503_020 Hb_002053_050 Hb_002053_050 Hb_000300_090--Hb_002053_050 Hb_009913_040--Hb_011926_040 Hb_009913_040--Hb_000173_060 Hb_004306_110 Hb_004306_110 Hb_009913_040--Hb_004306_110 Hb_002164_020 Hb_002164_020 Hb_009913_040--Hb_002164_020 Hb_000139_300 Hb_000139_300 Hb_009913_040--Hb_000139_300 Hb_008025_010 Hb_008025_010 Hb_009913_040--Hb_008025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06566 6.38134 17.0776 36.042 3.54062 13.9877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45396 3.01232 2.24398 7.72139 24.5139

CAGE analysis