Hb_007192_060

Information

Type -
Description -
Location Contig7192: 31485-32453
Sequence    

Annotation

kegg
ID rcu:RCOM_1508460
description hypothetical protein
nr
ID XP_002511308.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAT3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007192_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005608_010 0.2140075604 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
3 Hb_000258_290 0.2186818712 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
4 Hb_120662_010 0.2242941309 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
5 Hb_000030_240 0.2346631154 - - zinc finger protein, putative [Ricinus communis]
6 Hb_050686_010 0.2356564812 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000366_190 0.2414321879 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
8 Hb_000258_020 0.2440502099 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
9 Hb_000330_160 0.2446436385 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
10 Hb_009485_020 0.2456516986 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
11 Hb_020499_010 0.2512562799 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_186857_010 0.2517587183 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_011953_030 0.2521191372 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
14 Hb_000062_030 0.2562010595 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
15 Hb_114984_010 0.2566917865 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001504_090 0.2581211079 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
17 Hb_000927_040 0.2586173748 - - -
18 Hb_006483_030 0.2594930937 - - Cucumisin precursor, putative [Ricinus communis]
19 Hb_031527_070 0.2595145988 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
20 Hb_008616_030 0.2612098236 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007192_060 Hb_007192_060 Hb_005608_010 Hb_005608_010 Hb_007192_060--Hb_005608_010 Hb_000258_290 Hb_000258_290 Hb_007192_060--Hb_000258_290 Hb_120662_010 Hb_120662_010 Hb_007192_060--Hb_120662_010 Hb_000030_240 Hb_000030_240 Hb_007192_060--Hb_000030_240 Hb_050686_010 Hb_050686_010 Hb_007192_060--Hb_050686_010 Hb_000366_190 Hb_000366_190 Hb_007192_060--Hb_000366_190 Hb_000260_370 Hb_000260_370 Hb_005608_010--Hb_000260_370 Hb_000062_030 Hb_000062_030 Hb_005608_010--Hb_000062_030 Hb_007044_010 Hb_007044_010 Hb_005608_010--Hb_007044_010 Hb_008616_030 Hb_008616_030 Hb_005608_010--Hb_008616_030 Hb_031527_070 Hb_031527_070 Hb_005608_010--Hb_031527_070 Hb_000091_060 Hb_000091_060 Hb_000258_290--Hb_000091_060 Hb_074197_020 Hb_074197_020 Hb_000258_290--Hb_074197_020 Hb_005843_160 Hb_005843_160 Hb_000258_290--Hb_005843_160 Hb_009485_020 Hb_009485_020 Hb_000258_290--Hb_009485_020 Hb_000424_150 Hb_000424_150 Hb_000258_290--Hb_000424_150 Hb_002498_050 Hb_002498_050 Hb_000258_290--Hb_002498_050 Hb_001935_190 Hb_001935_190 Hb_120662_010--Hb_001935_190 Hb_003043_060 Hb_003043_060 Hb_120662_010--Hb_003043_060 Hb_030627_040 Hb_030627_040 Hb_120662_010--Hb_030627_040 Hb_120662_010--Hb_050686_010 Hb_000329_420 Hb_000329_420 Hb_120662_010--Hb_000329_420 Hb_001901_080 Hb_001901_080 Hb_120662_010--Hb_001901_080 Hb_001080_130 Hb_001080_130 Hb_000030_240--Hb_001080_130 Hb_000733_050 Hb_000733_050 Hb_000030_240--Hb_000733_050 Hb_000221_120 Hb_000221_120 Hb_000030_240--Hb_000221_120 Hb_078477_050 Hb_078477_050 Hb_000030_240--Hb_078477_050 Hb_000030_240--Hb_009485_020 Hb_000030_240--Hb_000258_290 Hb_114984_010 Hb_114984_010 Hb_050686_010--Hb_114984_010 Hb_006483_010 Hb_006483_010 Hb_050686_010--Hb_006483_010 Hb_050686_010--Hb_000366_190 Hb_000040_050 Hb_000040_050 Hb_050686_010--Hb_000040_050 Hb_050686_010--Hb_000329_420 Hb_009119_030 Hb_009119_030 Hb_000366_190--Hb_009119_030 Hb_020805_010 Hb_020805_010 Hb_000366_190--Hb_020805_010 Hb_000366_190--Hb_000062_030 Hb_000366_190--Hb_009485_020 Hb_002320_070 Hb_002320_070 Hb_000366_190--Hb_002320_070 Hb_000749_110 Hb_000749_110 Hb_000366_190--Hb_000749_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78574 1.49107 0.405426 3.69828 5.94171 2.40345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0527113 0.041456 0 1.6017 1.09997

CAGE analysis