Hb_007192_070

Information

Type -
Description -
Location Contig7192: 34788-42197
Sequence    

Annotation

kegg
ID rcu:RCOM_0868180
description 50S ribosomal protein L19, putative
nr
ID XP_012079968.1
description PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
swissprot
ID P82413
description 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2
trembl
ID A0A067KFH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11396 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein l19- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55545: 34874-37723 , PASA_asmbl_55546: 41103-41203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007192_070 0.0 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
2 Hb_000172_580 0.0818139877 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_017987_030 0.0941742405 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
4 Hb_004330_090 0.0945658704 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
5 Hb_000074_080 0.0957956364 - - unknown [Populus trichocarpa]
6 Hb_003376_230 0.098472509 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
7 Hb_002553_060 0.0991828421 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
8 Hb_002811_160 0.1019312993 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
9 Hb_107879_010 0.1027575932 - - phosphoglycerate mutase, putative [Ricinus communis]
10 Hb_000075_040 0.1028425706 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
11 Hb_012055_030 0.1038392813 - - Protein FRIGIDA, putative [Ricinus communis]
12 Hb_000212_440 0.1042766735 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000137_040 0.1070522449 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
14 Hb_000110_310 0.1074554227 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
15 Hb_000579_120 0.1076909287 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
16 Hb_002496_020 0.1084491635 - - DNA binding protein, putative [Ricinus communis]
17 Hb_005800_030 0.1086467051 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
18 Hb_002014_030 0.1086920493 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
19 Hb_001946_400 0.1092922939 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
20 Hb_018272_020 0.1101415843 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]

Gene co-expression network

sample Hb_007192_070 Hb_007192_070 Hb_000172_580 Hb_000172_580 Hb_007192_070--Hb_000172_580 Hb_017987_030 Hb_017987_030 Hb_007192_070--Hb_017987_030 Hb_004330_090 Hb_004330_090 Hb_007192_070--Hb_004330_090 Hb_000074_080 Hb_000074_080 Hb_007192_070--Hb_000074_080 Hb_003376_230 Hb_003376_230 Hb_007192_070--Hb_003376_230 Hb_002553_060 Hb_002553_060 Hb_007192_070--Hb_002553_060 Hb_000172_580--Hb_003376_230 Hb_001584_200 Hb_001584_200 Hb_000172_580--Hb_001584_200 Hb_005800_030 Hb_005800_030 Hb_000172_580--Hb_005800_030 Hb_002496_020 Hb_002496_020 Hb_000172_580--Hb_002496_020 Hb_002014_030 Hb_002014_030 Hb_000172_580--Hb_002014_030 Hb_017987_030--Hb_002014_030 Hb_012055_030 Hb_012055_030 Hb_017987_030--Hb_012055_030 Hb_000110_250 Hb_000110_250 Hb_017987_030--Hb_000110_250 Hb_000840_200 Hb_000840_200 Hb_017987_030--Hb_000840_200 Hb_000075_040 Hb_000075_040 Hb_017987_030--Hb_000075_040 Hb_004330_090--Hb_002553_060 Hb_000137_040 Hb_000137_040 Hb_004330_090--Hb_000137_040 Hb_001021_150 Hb_001021_150 Hb_004330_090--Hb_001021_150 Hb_000227_170 Hb_000227_170 Hb_004330_090--Hb_000227_170 Hb_000676_120 Hb_000676_120 Hb_004330_090--Hb_000676_120 Hb_189216_020 Hb_189216_020 Hb_004330_090--Hb_189216_020 Hb_001247_310 Hb_001247_310 Hb_000074_080--Hb_001247_310 Hb_001119_060 Hb_001119_060 Hb_000074_080--Hb_001119_060 Hb_000181_130 Hb_000181_130 Hb_000074_080--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_000074_080--Hb_009328_020 Hb_000915_260 Hb_000915_260 Hb_000074_080--Hb_000915_260 Hb_000212_440 Hb_000212_440 Hb_003376_230--Hb_000212_440 Hb_011512_110 Hb_011512_110 Hb_003376_230--Hb_011512_110 Hb_003153_010 Hb_003153_010 Hb_003376_230--Hb_003153_010 Hb_003376_230--Hb_001584_200 Hb_005405_020 Hb_005405_020 Hb_003376_230--Hb_005405_020 Hb_001946_400 Hb_001946_400 Hb_002553_060--Hb_001946_400 Hb_002553_060--Hb_001021_150 Hb_001318_280 Hb_001318_280 Hb_002553_060--Hb_001318_280 Hb_008616_050 Hb_008616_050 Hb_002553_060--Hb_008616_050 Hb_000976_120 Hb_000976_120 Hb_002553_060--Hb_000976_120 Hb_002553_060--Hb_189216_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.561929 0.147408 0.602606 0.59841 0.47048 0.493232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.450049 0.767069 0.330367 0.472183 0.919104

CAGE analysis