Hb_007192_100

Information

Type -
Description -
Location Contig7192: 55161-59160
Sequence    

Annotation

kegg
ID rcu:RCOM_1508600
description hypothetical protein
nr
ID XP_012079973.1
description PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
swissprot
ID Q7XBA5
description Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza sativa subsp. japonica GN=DI19-6 PE=2 SV=1
trembl
ID A0A067K7K3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11399 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55551: 55206-59046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007192_100 0.0 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
2 Hb_001172_120 0.0735828123 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
3 Hb_001005_080 0.0786287424 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
4 Hb_015807_100 0.0786654868 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_000115_230 0.0806643786 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
6 Hb_152910_020 0.0811183285 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
7 Hb_000384_120 0.0890961363 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
8 Hb_000175_030 0.0896345437 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
9 Hb_004052_050 0.0912918303 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
10 Hb_050806_010 0.0928934509 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
11 Hb_011021_040 0.0951774713 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
12 Hb_000069_700 0.0959652291 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
13 Hb_000417_260 0.0962832154 - - protein with unknown function [Ricinus communis]
14 Hb_003462_120 0.0967702366 - - Acidic endochitinase [Theobroma cacao]
15 Hb_001314_040 0.0982454183 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
16 Hb_003880_030 0.0984212233 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
17 Hb_001481_140 0.0997531643 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
18 Hb_007441_260 0.1008322263 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
19 Hb_001519_030 0.1018952264 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
20 Hb_003783_030 0.1031581861 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]

Gene co-expression network

sample Hb_007192_100 Hb_007192_100 Hb_001172_120 Hb_001172_120 Hb_007192_100--Hb_001172_120 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_000115_230 Hb_000115_230 Hb_007192_100--Hb_000115_230 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120 Hb_000069_700 Hb_000069_700 Hb_001172_120--Hb_000069_700 Hb_007037_020 Hb_007037_020 Hb_001172_120--Hb_007037_020 Hb_001172_120--Hb_000115_230 Hb_001235_110 Hb_001235_110 Hb_001172_120--Hb_001235_110 Hb_011021_040 Hb_011021_040 Hb_001172_120--Hb_011021_040 Hb_000417_260 Hb_000417_260 Hb_001005_080--Hb_000417_260 Hb_001481_140 Hb_001481_140 Hb_001005_080--Hb_001481_140 Hb_001519_030 Hb_001519_030 Hb_001005_080--Hb_001519_030 Hb_001005_080--Hb_152910_020 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_015807_100--Hb_000115_230 Hb_000450_130 Hb_000450_130 Hb_015807_100--Hb_000450_130 Hb_000349_290 Hb_000349_290 Hb_015807_100--Hb_000349_290 Hb_015807_100--Hb_001172_120 Hb_029904_030 Hb_029904_030 Hb_015807_100--Hb_029904_030 Hb_000239_030 Hb_000239_030 Hb_000115_230--Hb_000239_030 Hb_002374_390 Hb_002374_390 Hb_000115_230--Hb_002374_390 Hb_000392_380 Hb_000392_380 Hb_000115_230--Hb_000392_380 Hb_003185_050 Hb_003185_050 Hb_152910_020--Hb_003185_050 Hb_029904_040 Hb_029904_040 Hb_152910_020--Hb_029904_040 Hb_152910_020--Hb_000115_230 Hb_050806_010 Hb_050806_010 Hb_152910_020--Hb_050806_010 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.53834 11.2703 10.4853 18.309 5.47683 8.16573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.1981 46.1674 33.6393 13.0483 9.776

CAGE analysis