Hb_007193_100

Information

Type -
Description -
Location Contig7193: 157586-163435
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02100g
description syntaxin family protein
nr
ID XP_006368367.1
description syntaxin family protein [Populus trichocarpa]
swissprot
ID P93654
description Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1
trembl
ID B9MU58
description Syntaxin family protein OS=Populus trichocarpa GN=POPTR_0001s02100g PE=4 SV=1
Gene Ontology
ID GO:0005622
description syntaxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55554: 157594-163435 , PASA_asmbl_55555: 157609-163441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007193_100 0.0 - - syntaxin family protein [Populus trichocarpa]
2 Hb_000175_070 0.0423651156 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
3 Hb_063134_010 0.0520192084 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
4 Hb_000317_430 0.0659488956 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
5 Hb_029510_140 0.0702066306 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
6 Hb_118419_020 0.0711629396 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
7 Hb_001246_100 0.0744846672 - - Ras-related small GTP-binding family protein [Theobroma cacao]
8 Hb_000103_140 0.0756924854 - - ribosomal protein S3a [Populus trichocarpa]
9 Hb_004453_150 0.0808739931 - - BnaC02g13240D [Brassica napus]
10 Hb_008173_120 0.084738735 - - conserved hypothetical protein [Ricinus communis]
11 Hb_125000_010 0.0851134529 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
12 Hb_001454_140 0.0852354493 - - protein arginine n-methyltransferase, putative [Ricinus communis]
13 Hb_000684_230 0.0854933104 - - 40S ribosomal protein S23, putative [Ricinus communis]
14 Hb_003005_020 0.0855749486 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
15 Hb_141131_010 0.0872295636 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
16 Hb_003125_040 0.0888863662 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
17 Hb_010436_070 0.0894319185 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
18 Hb_000152_430 0.0894485562 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
19 Hb_006788_070 0.0903487421 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
20 Hb_000365_360 0.0908622826 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007193_100 Hb_007193_100 Hb_000175_070 Hb_000175_070 Hb_007193_100--Hb_000175_070 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_000317_430 Hb_000317_430 Hb_007193_100--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_007193_100--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_000175_070--Hb_000317_430 Hb_000175_070--Hb_029510_140 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_063134_010--Hb_029510_140 Hb_003005_020 Hb_003005_020 Hb_063134_010--Hb_003005_020 Hb_063134_010--Hb_000175_070 Hb_000172_370 Hb_000172_370 Hb_063134_010--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_063134_010--Hb_000384_090 Hb_000035_380 Hb_000035_380 Hb_000317_430--Hb_000035_380 Hb_000317_430--Hb_118419_020 Hb_060809_010 Hb_060809_010 Hb_000317_430--Hb_060809_010 Hb_000365_360 Hb_000365_360 Hb_000317_430--Hb_000365_360 Hb_001518_040 Hb_001518_040 Hb_029510_140--Hb_001518_040 Hb_029510_140--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_029510_140--Hb_010436_070 Hb_118419_020--Hb_010436_070 Hb_125000_010 Hb_125000_010 Hb_118419_020--Hb_125000_010 Hb_002097_110 Hb_002097_110 Hb_118419_020--Hb_002097_110 Hb_006447_010 Hb_006447_010 Hb_001246_100--Hb_006447_010 Hb_001454_140 Hb_001454_140 Hb_001246_100--Hb_001454_140 Hb_000386_040 Hb_000386_040 Hb_001246_100--Hb_000386_040 Hb_001246_100--Hb_000175_070 Hb_143813_010 Hb_143813_010 Hb_001246_100--Hb_143813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.821 20.7241 19.5947 45.3203 112.996 196.541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.167 140.874 103.792 37.5039 24.5457

CAGE analysis