Hb_007194_020

Information

Type -
Description -
Location Contig7194: 51971-52892
Sequence    

Annotation

kegg
ID tcc:TCM_023639
description hypothetical protein
nr
ID XP_012081592.1
description PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EWB4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023639 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007194_020 0.0 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
2 Hb_058148_010 0.0439694006 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_000862_020 0.0958187679 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
4 Hb_063472_010 0.1263010121 - - hypothetical protein [Pseudomonas tolaasii]
5 Hb_006216_010 0.1364167378 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
6 Hb_150998_010 0.1452452902 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_010810_090 0.1536443039 - - -
8 Hb_045527_010 0.1728586952 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
9 Hb_003185_060 0.2210339353 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
10 Hb_046117_040 0.2342722561 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
11 Hb_004361_030 0.2692447001 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
12 Hb_000281_170 0.2749612949 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_001687_050 0.2753968178 - - -
14 Hb_002774_130 0.2761853666 - - -
15 Hb_020581_030 0.2849241285 - - -
16 Hb_126907_010 0.2862837784 - - -
17 Hb_172632_020 0.2922177376 - - -
18 Hb_000117_170 0.2990968256 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
19 Hb_000407_060 0.3044731864 - - -
20 Hb_007163_140 0.3068902417 transcription factor TF Family: bHLH hypothetical protein JCGZ_12606 [Jatropha curcas]

Gene co-expression network

sample Hb_007194_020 Hb_007194_020 Hb_058148_010 Hb_058148_010 Hb_007194_020--Hb_058148_010 Hb_000862_020 Hb_000862_020 Hb_007194_020--Hb_000862_020 Hb_063472_010 Hb_063472_010 Hb_007194_020--Hb_063472_010 Hb_006216_010 Hb_006216_010 Hb_007194_020--Hb_006216_010 Hb_150998_010 Hb_150998_010 Hb_007194_020--Hb_150998_010 Hb_010810_090 Hb_010810_090 Hb_007194_020--Hb_010810_090 Hb_058148_010--Hb_063472_010 Hb_045527_010 Hb_045527_010 Hb_058148_010--Hb_045527_010 Hb_058148_010--Hb_000862_020 Hb_058148_010--Hb_006216_010 Hb_058148_010--Hb_010810_090 Hb_000862_020--Hb_150998_010 Hb_000862_020--Hb_006216_010 Hb_046117_040 Hb_046117_040 Hb_000862_020--Hb_046117_040 Hb_000862_020--Hb_010810_090 Hb_063472_010--Hb_045527_010 Hb_003185_060 Hb_003185_060 Hb_063472_010--Hb_003185_060 Hb_063472_010--Hb_006216_010 Hb_063472_010--Hb_010810_090 Hb_006216_010--Hb_150998_010 Hb_006216_010--Hb_046117_040 Hb_126907_010 Hb_126907_010 Hb_006216_010--Hb_126907_010 Hb_150998_010--Hb_046117_040 Hb_150998_010--Hb_126907_010 Hb_000281_170 Hb_000281_170 Hb_150998_010--Hb_000281_170 Hb_010810_090--Hb_045527_010 Hb_001410_100 Hb_001410_100 Hb_010810_090--Hb_001410_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0277326 0 0 0 0.0292227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0242862 0

CAGE analysis