Hb_007210_020

Information

Type -
Description -
Location Contig7210: 6539-22306
Sequence    

Annotation

kegg
ID sot:102594881
description hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like
nr
ID XP_006348934.1
description PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like [Solanum tuberosum]
swissprot
ID O49354
description Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Arabidopsis thaliana GN=COQ3 PE=2 SV=2
trembl
ID A0A059CCG5
description Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Eucalyptus grandis GN=COQ3 PE=3 SV=1
Gene Ontology
ID GO:0008425
description hexaprenyldihydroxybenzoate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55659: 21794-22391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007210_020 0.0 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like [Solanum tuberosum]
2 Hb_000109_230 0.2313559824 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000191_140 0.2436445205 - - PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
4 Hb_005144_170 0.251427171 - - PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
5 Hb_004785_050 0.2533685818 - - PREDICTED: serine decarboxylase [Jatropha curcas]
6 Hb_128473_010 0.2624214161 - - -
7 Hb_000157_050 0.262653314 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001621_120 0.26498218 - - Zeamatin precursor, putative [Ricinus communis]
9 Hb_000997_380 0.2658405484 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
10 Hb_003906_020 0.2681022 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
11 Hb_017002_010 0.2697875751 - - PREDICTED: expansin-A15-like [Jatropha curcas]
12 Hb_074836_020 0.2732591269 - - unnamed protein product [Vitis vinifera]
13 Hb_178968_040 0.2736382169 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003813_010 0.2748475233 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
15 Hb_000635_020 0.2791614193 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011316_140 0.2795489568 - - PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
17 Hb_001597_050 0.2821740173 - - -
18 Hb_003058_230 0.2832305091 - - copper ion binding protein, putative [Ricinus communis]
19 Hb_008185_020 0.2848315451 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
20 Hb_006816_240 0.2850074527 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]

Gene co-expression network

sample Hb_007210_020 Hb_007210_020 Hb_000109_230 Hb_000109_230 Hb_007210_020--Hb_000109_230 Hb_000191_140 Hb_000191_140 Hb_007210_020--Hb_000191_140 Hb_005144_170 Hb_005144_170 Hb_007210_020--Hb_005144_170 Hb_004785_050 Hb_004785_050 Hb_007210_020--Hb_004785_050 Hb_128473_010 Hb_128473_010 Hb_007210_020--Hb_128473_010 Hb_000157_050 Hb_000157_050 Hb_007210_020--Hb_000157_050 Hb_001597_050 Hb_001597_050 Hb_000109_230--Hb_001597_050 Hb_000032_050 Hb_000032_050 Hb_000109_230--Hb_000032_050 Hb_000109_230--Hb_000157_050 Hb_001828_100 Hb_001828_100 Hb_000109_230--Hb_001828_100 Hb_178968_040 Hb_178968_040 Hb_000109_230--Hb_178968_040 Hb_118283_010 Hb_118283_010 Hb_000191_140--Hb_118283_010 Hb_001195_130 Hb_001195_130 Hb_000191_140--Hb_001195_130 Hb_000191_140--Hb_005144_170 Hb_017439_010 Hb_017439_010 Hb_000191_140--Hb_017439_010 Hb_012286_060 Hb_012286_060 Hb_000191_140--Hb_012286_060 Hb_000932_050 Hb_000932_050 Hb_000191_140--Hb_000932_050 Hb_004117_330 Hb_004117_330 Hb_005144_170--Hb_004117_330 Hb_001143_230 Hb_001143_230 Hb_005144_170--Hb_001143_230 Hb_002774_120 Hb_002774_120 Hb_005144_170--Hb_002774_120 Hb_002490_030 Hb_002490_030 Hb_005144_170--Hb_002490_030 Hb_000413_080 Hb_000413_080 Hb_005144_170--Hb_000413_080 Hb_004308_020 Hb_004308_020 Hb_004785_050--Hb_004308_020 Hb_004785_050--Hb_128473_010 Hb_000261_170 Hb_000261_170 Hb_004785_050--Hb_000261_170 Hb_159327_010 Hb_159327_010 Hb_004785_050--Hb_159327_010 Hb_003813_010 Hb_003813_010 Hb_004785_050--Hb_003813_010 Hb_128473_010--Hb_000261_170 Hb_073799_010 Hb_073799_010 Hb_128473_010--Hb_073799_010 Hb_000649_340 Hb_000649_340 Hb_128473_010--Hb_000649_340 Hb_000311_040 Hb_000311_040 Hb_128473_010--Hb_000311_040 Hb_008185_020 Hb_008185_020 Hb_128473_010--Hb_008185_020 Hb_000483_400 Hb_000483_400 Hb_128473_010--Hb_000483_400 Hb_001635_010 Hb_001635_010 Hb_000157_050--Hb_001635_010 Hb_000028_260 Hb_000028_260 Hb_000157_050--Hb_000028_260 Hb_000157_050--Hb_001597_050 Hb_000157_050--Hb_178968_040 Hb_002228_080 Hb_002228_080 Hb_000157_050--Hb_002228_080 Hb_001486_270 Hb_001486_270 Hb_000157_050--Hb_001486_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.254118 0 0.851049 2.56589 0 0.216474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.281949 0.369348 0 0 0.144032

CAGE analysis