Hb_007218_060

Information

Type -
Description -
Location Contig7218: 80763-85531
Sequence    

Annotation

kegg
ID rcu:RCOM_1487470
description polyadenylate-binding protein, putative
nr
ID XP_012069054.1
description PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
swissprot
ID O04319
description Polyadenylate-binding protein 6 OS=Arabidopsis thaliana GN=PAB6 PE=2 SV=1
trembl
ID B9RQB9
description Polyadenylate-binding protein, putative OS=Ricinus communis GN=RCOM_1487470 PE=4 SV=1
Gene Ontology
ID GO:0003676
description polyadenylate-binding protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_060 0.0 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
2 Hb_001247_020 0.1588222917 - - galactinol synthase family protein [Populus trichocarpa]
3 Hb_000086_620 0.1643405513 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
4 Hb_119316_020 0.1713739795 - - -
5 Hb_001369_020 0.1744891325 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
6 Hb_001636_060 0.1746624854 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
7 Hb_001511_250 0.175868889 - - fatty acid desaturase [Manihot esculenta]
8 Hb_000318_410 0.1767500741 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
9 Hb_005080_020 0.1785824021 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
10 Hb_000020_070 0.186493459 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
11 Hb_001623_410 0.1895240799 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
12 Hb_062447_010 0.1999089821 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
13 Hb_003599_020 0.2003616924 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
14 Hb_003207_100 0.2004370455 transcription factor TF Family: TCP PREDICTED: transcription factor TCP9-like [Jatropha curcas]
15 Hb_001898_130 0.2026199821 - - ATP binding protein, putative [Ricinus communis]
16 Hb_007193_030 0.2062256037 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
17 Hb_000402_090 0.2083195228 - - Lipase [Glycine soja]
18 Hb_095694_010 0.2093541339 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
19 Hb_048476_040 0.2113766978 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
20 Hb_132840_020 0.211405968 - - PREDICTED: protein LHY [Jatropha curcas]

Gene co-expression network

sample Hb_007218_060 Hb_007218_060 Hb_001247_020 Hb_001247_020 Hb_007218_060--Hb_001247_020 Hb_000086_620 Hb_000086_620 Hb_007218_060--Hb_000086_620 Hb_119316_020 Hb_119316_020 Hb_007218_060--Hb_119316_020 Hb_001369_020 Hb_001369_020 Hb_007218_060--Hb_001369_020 Hb_001636_060 Hb_001636_060 Hb_007218_060--Hb_001636_060 Hb_001511_250 Hb_001511_250 Hb_007218_060--Hb_001511_250 Hb_000020_070 Hb_000020_070 Hb_001247_020--Hb_000020_070 Hb_000123_240 Hb_000123_240 Hb_001247_020--Hb_000123_240 Hb_005080_020 Hb_005080_020 Hb_001247_020--Hb_005080_020 Hb_048476_040 Hb_048476_040 Hb_001247_020--Hb_048476_040 Hb_012366_050 Hb_012366_050 Hb_001247_020--Hb_012366_050 Hb_001623_410 Hb_001623_410 Hb_000086_620--Hb_001623_410 Hb_011930_120 Hb_011930_120 Hb_000086_620--Hb_011930_120 Hb_001989_060 Hb_001989_060 Hb_000086_620--Hb_001989_060 Hb_001247_010 Hb_001247_010 Hb_000086_620--Hb_001247_010 Hb_010126_030 Hb_010126_030 Hb_000086_620--Hb_010126_030 Hb_000451_040 Hb_000451_040 Hb_000086_620--Hb_000451_040 Hb_119316_020--Hb_001511_250 Hb_119316_020--Hb_001636_060 Hb_119316_020--Hb_000086_620 Hb_001579_070 Hb_001579_070 Hb_119316_020--Hb_001579_070 Hb_031108_010 Hb_031108_010 Hb_119316_020--Hb_031108_010 Hb_001242_180 Hb_001242_180 Hb_119316_020--Hb_001242_180 Hb_073171_050 Hb_073171_050 Hb_001369_020--Hb_073171_050 Hb_007193_030 Hb_007193_030 Hb_001369_020--Hb_007193_030 Hb_028285_020 Hb_028285_020 Hb_001369_020--Hb_028285_020 Hb_001369_020--Hb_005080_020 Hb_001369_020--Hb_001623_410 Hb_003905_040 Hb_003905_040 Hb_001369_020--Hb_003905_040 Hb_001636_060--Hb_001511_250 Hb_001636_060--Hb_031108_010 Hb_001636_060--Hb_000020_070 Hb_001636_060--Hb_005080_020 Hb_001898_130 Hb_001898_130 Hb_001636_060--Hb_001898_130 Hb_001511_250--Hb_005080_020 Hb_001511_250--Hb_031108_010 Hb_001511_250--Hb_000020_070 Hb_001511_250--Hb_000086_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0599558 1.84086 1.56439 0.362595 0.0307195 0.0287296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.136986 0.407199 0.225981 0.618685

CAGE analysis