Hb_007218_070

Information

Type -
Description -
Location Contig7218: 86762-89615
Sequence    

Annotation

kegg
ID rcu:RCOM_1487480
description hypothetical protein
nr
ID XP_002515939.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID B9RQC0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1487480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000184_230 0.1700586952 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Jatropha curcas]
3 Hb_094437_060 0.2593155299 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
4 Hb_001699_200 0.2698591113 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
5 Hb_000614_170 0.2745309673 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
6 Hb_000200_290 0.2755965588 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
7 Hb_002151_050 0.276553373 - - cytochrome P450, putative [Ricinus communis]
8 Hb_005873_010 0.2797930347 - - cysteine desulfurylase, putative [Ricinus communis]
9 Hb_000011_290 0.281483209 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
10 Hb_000320_300 0.2860263772 - - prephenate dehydratase, putative [Ricinus communis]
11 Hb_073866_010 0.2889001298 - - PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
12 Hb_000563_190 0.2900426526 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
13 Hb_004208_130 0.2902118979 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
14 Hb_000912_020 0.2925197225 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
15 Hb_105602_010 0.2925931878 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
16 Hb_007747_180 0.301268986 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
17 Hb_002291_010 0.3014748558 - - ring finger protein, putative [Ricinus communis]
18 Hb_001258_060 0.3015942578 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
19 Hb_002835_100 0.3047852522 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
20 Hb_000316_020 0.3049470724 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007218_070 Hb_007218_070 Hb_000184_230 Hb_000184_230 Hb_007218_070--Hb_000184_230 Hb_094437_060 Hb_094437_060 Hb_007218_070--Hb_094437_060 Hb_001699_200 Hb_001699_200 Hb_007218_070--Hb_001699_200 Hb_000614_170 Hb_000614_170 Hb_007218_070--Hb_000614_170 Hb_000200_290 Hb_000200_290 Hb_007218_070--Hb_000200_290 Hb_002151_050 Hb_002151_050 Hb_007218_070--Hb_002151_050 Hb_000184_230--Hb_000614_170 Hb_007432_020 Hb_007432_020 Hb_000184_230--Hb_007432_020 Hb_000563_190 Hb_000563_190 Hb_000184_230--Hb_000563_190 Hb_005873_010 Hb_005873_010 Hb_000184_230--Hb_005873_010 Hb_002217_230 Hb_002217_230 Hb_000184_230--Hb_002217_230 Hb_000805_320 Hb_000805_320 Hb_094437_060--Hb_000805_320 Hb_138710_010 Hb_138710_010 Hb_094437_060--Hb_138710_010 Hb_001355_130 Hb_001355_130 Hb_094437_060--Hb_001355_130 Hb_094437_060--Hb_005873_010 Hb_094437_060--Hb_007432_020 Hb_105602_010 Hb_105602_010 Hb_094437_060--Hb_105602_010 Hb_000011_290 Hb_000011_290 Hb_001699_200--Hb_000011_290 Hb_001699_200--Hb_000614_170 Hb_000320_300 Hb_000320_300 Hb_001699_200--Hb_000320_300 Hb_100147_010 Hb_100147_010 Hb_001699_200--Hb_100147_010 Hb_001699_200--Hb_005873_010 Hb_001971_060 Hb_001971_060 Hb_001699_200--Hb_001971_060 Hb_001332_040 Hb_001332_040 Hb_000614_170--Hb_001332_040 Hb_000614_170--Hb_002217_230 Hb_017170_030 Hb_017170_030 Hb_000614_170--Hb_017170_030 Hb_028487_170 Hb_028487_170 Hb_000614_170--Hb_028487_170 Hb_029385_010 Hb_029385_010 Hb_000614_170--Hb_029385_010 Hb_001153_020 Hb_001153_020 Hb_000200_290--Hb_001153_020 Hb_000616_040 Hb_000616_040 Hb_000200_290--Hb_000616_040 Hb_000454_070 Hb_000454_070 Hb_000200_290--Hb_000454_070 Hb_181600_010 Hb_181600_010 Hb_000200_290--Hb_181600_010 Hb_002835_100 Hb_002835_100 Hb_000200_290--Hb_002835_100 Hb_021443_080 Hb_021443_080 Hb_000200_290--Hb_021443_080 Hb_003913_080 Hb_003913_080 Hb_002151_050--Hb_003913_080 Hb_012239_100 Hb_012239_100 Hb_002151_050--Hb_012239_100 Hb_002138_010 Hb_002138_010 Hb_002151_050--Hb_002138_010 Hb_036790_020 Hb_036790_020 Hb_002151_050--Hb_036790_020 Hb_002151_050--Hb_000184_230 Hb_145084_010 Hb_145084_010 Hb_002151_050--Hb_145084_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0190875 0 0.566721 0.043445 0.105405 0.152846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.793677 0.715912 1.10144 1.91868 0.129253

CAGE analysis