Hb_007218_090

Information

Type -
Description -
Location Contig7218: 100205-101882
Sequence    

Annotation

kegg
ID sot:102604101
description uncharacterized LOC102604101
nr
ID XP_009762955.1
description PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0A9D2Y9
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0003824
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_090 0.0 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
2 Hb_008887_010 0.0782673363 - - -
3 Hb_011179_040 0.211057492 - - conserved hypothetical protein [Ricinus communis]
4 Hb_182310_010 0.2221973654 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_001241_040 0.2281064994 - - -
6 Hb_000563_280 0.2329976755 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
7 Hb_067345_050 0.2362992292 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
8 Hb_001935_180 0.2439222993 - - hypothetical protein VITISV_028082 [Vitis vinifera]
9 Hb_075570_010 0.2484131886 - - -
10 Hb_000007_310 0.2593367256 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
11 Hb_177627_010 0.2666468889 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_132629_010 0.2683747984 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_001775_040 0.27150377 - - -
14 Hb_004307_040 0.2716181472 - - -
15 Hb_000012_300 0.27196105 - - -
16 Hb_066784_020 0.2749554804 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010290_020 0.2818169157 - - RAB6-interacting protein, putative [Ricinus communis]
18 Hb_001604_110 0.2820386544 - - -
19 Hb_000580_060 0.2824550096 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
20 Hb_027998_030 0.282913105 - - laccase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007218_090 Hb_007218_090 Hb_008887_010 Hb_008887_010 Hb_007218_090--Hb_008887_010 Hb_011179_040 Hb_011179_040 Hb_007218_090--Hb_011179_040 Hb_182310_010 Hb_182310_010 Hb_007218_090--Hb_182310_010 Hb_001241_040 Hb_001241_040 Hb_007218_090--Hb_001241_040 Hb_000563_280 Hb_000563_280 Hb_007218_090--Hb_000563_280 Hb_067345_050 Hb_067345_050 Hb_007218_090--Hb_067345_050 Hb_008887_010--Hb_011179_040 Hb_075570_010 Hb_075570_010 Hb_008887_010--Hb_075570_010 Hb_001935_180 Hb_001935_180 Hb_008887_010--Hb_001935_180 Hb_000007_310 Hb_000007_310 Hb_008887_010--Hb_000007_310 Hb_027998_030 Hb_027998_030 Hb_008887_010--Hb_027998_030 Hb_003108_010 Hb_003108_010 Hb_011179_040--Hb_003108_010 Hb_040562_010 Hb_040562_010 Hb_011179_040--Hb_040562_010 Hb_011179_040--Hb_027998_030 Hb_156144_020 Hb_156144_020 Hb_011179_040--Hb_156144_020 Hb_182310_010--Hb_000563_280 Hb_182310_010--Hb_067345_050 Hb_105484_010 Hb_105484_010 Hb_182310_010--Hb_105484_010 Hb_182310_010--Hb_075570_010 Hb_182310_010--Hb_001241_040 Hb_001604_110 Hb_001604_110 Hb_182310_010--Hb_001604_110 Hb_010290_020 Hb_010290_020 Hb_001241_040--Hb_010290_020 Hb_001241_040--Hb_000563_280 Hb_001241_040--Hb_001604_110 Hb_000831_040 Hb_000831_040 Hb_001241_040--Hb_000831_040 Hb_001892_160 Hb_001892_160 Hb_001241_040--Hb_001892_160 Hb_000563_280--Hb_105484_010 Hb_000563_280--Hb_067345_050 Hb_066784_020 Hb_066784_020 Hb_000563_280--Hb_066784_020 Hb_000563_280--Hb_000831_040 Hb_010997_050 Hb_010997_050 Hb_000563_280--Hb_010997_050 Hb_067345_050--Hb_066784_020 Hb_001135_270 Hb_001135_270 Hb_067345_050--Hb_001135_270 Hb_003529_210 Hb_003529_210 Hb_067345_050--Hb_003529_210 Hb_081636_010 Hb_081636_010 Hb_067345_050--Hb_081636_010 Hb_005799_030 Hb_005799_030 Hb_067345_050--Hb_005799_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0316002 0 0 0 0.0316719 0.0554826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0113384 0

CAGE analysis