Hb_007220_010

Information

Type -
Description -
Location Contig7220: 6114-12247
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10380g
description POPTRDRAFT_557395; Methylcrotonyl-CoA carboxylase beta chain family protein
nr
ID XP_012066857.1
description PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Jatropha curcas]
swissprot
ID Q9LDD8
description Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Arabidopsis thaliana GN=MCCB PE=2 SV=1
trembl
ID A0A067L1J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01591 PE=4 SV=1
Gene Ontology
ID GO:0016874
description methylcrotonoyl- carboxylase beta mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55703: 8716-11002 , PASA_asmbl_55705: 10081-10315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007220_010 0.0 - - PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Jatropha curcas]
2 Hb_000169_040 0.0799546994 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
3 Hb_007304_090 0.0881734858 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
4 Hb_028486_030 0.0909669548 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
5 Hb_000840_180 0.0986962212 - - protein BOLA2 [Jatropha curcas]
6 Hb_001318_260 0.1062870741 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
7 Hb_000327_060 0.1083205524 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
8 Hb_000441_110 0.1115610395 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
9 Hb_003540_240 0.1115826897 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
10 Hb_003669_020 0.1116364631 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
11 Hb_000046_050 0.1116616244 - - PREDICTED: LEC14B homolog [Jatropha curcas]
12 Hb_003050_280 0.1125485553 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
13 Hb_011512_070 0.1127735403 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
14 Hb_007760_040 0.1141936942 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
15 Hb_018133_020 0.1143451973 - - transporter, putative [Ricinus communis]
16 Hb_003768_030 0.1148716821 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
17 Hb_026549_040 0.1153946089 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
18 Hb_006198_070 0.1175355228 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
19 Hb_006153_110 0.118330694 - - dimethylaniline monooxygenase, putative [Ricinus communis]
20 Hb_004324_270 0.1186840992 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]

Gene co-expression network

sample Hb_007220_010 Hb_007220_010 Hb_000169_040 Hb_000169_040 Hb_007220_010--Hb_000169_040 Hb_007304_090 Hb_007304_090 Hb_007220_010--Hb_007304_090 Hb_028486_030 Hb_028486_030 Hb_007220_010--Hb_028486_030 Hb_000840_180 Hb_000840_180 Hb_007220_010--Hb_000840_180 Hb_001318_260 Hb_001318_260 Hb_007220_010--Hb_001318_260 Hb_000327_060 Hb_000327_060 Hb_007220_010--Hb_000327_060 Hb_000169_040--Hb_000840_180 Hb_002056_050 Hb_002056_050 Hb_000169_040--Hb_002056_050 Hb_002798_020 Hb_002798_020 Hb_000169_040--Hb_002798_020 Hb_003540_240 Hb_003540_240 Hb_000169_040--Hb_003540_240 Hb_004127_020 Hb_004127_020 Hb_000169_040--Hb_004127_020 Hb_011512_070 Hb_011512_070 Hb_007304_090--Hb_011512_070 Hb_027380_050 Hb_027380_050 Hb_007304_090--Hb_027380_050 Hb_006153_110 Hb_006153_110 Hb_007304_090--Hb_006153_110 Hb_003669_020 Hb_003669_020 Hb_007304_090--Hb_003669_020 Hb_000046_050 Hb_000046_050 Hb_007304_090--Hb_000046_050 Hb_000680_140 Hb_000680_140 Hb_028486_030--Hb_000680_140 Hb_000962_040 Hb_000962_040 Hb_028486_030--Hb_000962_040 Hb_004846_090 Hb_004846_090 Hb_028486_030--Hb_004846_090 Hb_026549_040 Hb_026549_040 Hb_028486_030--Hb_026549_040 Hb_012675_050 Hb_012675_050 Hb_028486_030--Hb_012675_050 Hb_000840_180--Hb_004127_020 Hb_000840_180--Hb_002798_020 Hb_004459_040 Hb_004459_040 Hb_000840_180--Hb_004459_040 Hb_026053_020 Hb_026053_020 Hb_000840_180--Hb_026053_020 Hb_000996_140 Hb_000996_140 Hb_000840_180--Hb_000996_140 Hb_018133_020 Hb_018133_020 Hb_001318_260--Hb_018133_020 Hb_131181_010 Hb_131181_010 Hb_001318_260--Hb_131181_010 Hb_001279_080 Hb_001279_080 Hb_001318_260--Hb_001279_080 Hb_002540_080 Hb_002540_080 Hb_001318_260--Hb_002540_080 Hb_002872_050 Hb_002872_050 Hb_001318_260--Hb_002872_050 Hb_000160_180 Hb_000160_180 Hb_001318_260--Hb_000160_180 Hb_158445_010 Hb_158445_010 Hb_000327_060--Hb_158445_010 Hb_004143_150 Hb_004143_150 Hb_000327_060--Hb_004143_150 Hb_001545_160 Hb_001545_160 Hb_000327_060--Hb_001545_160 Hb_005162_060 Hb_005162_060 Hb_000327_060--Hb_005162_060 Hb_002676_090 Hb_002676_090 Hb_000327_060--Hb_002676_090 Hb_012423_030 Hb_012423_030 Hb_000327_060--Hb_012423_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.97769 5.52089 6.65361 4.71116 4.17877 4.96949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5557 23.3117 8.1721 6.78048 12.4967

CAGE analysis