Hb_007221_040

Information

Type -
Description -
Location Contig7221: 34229-37762
Sequence    

Annotation

kegg
ID pop:POPTR_0005s187101
description hypothetical protein
nr
ID XP_011014880.1
description PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5GGA1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s187101g PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at5g24010

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007221_040 0.0 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
2 Hb_004228_070 0.0891418326 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
3 Hb_002205_150 0.0925809113 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
4 Hb_021576_130 0.0960046623 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
5 Hb_003454_050 0.0970417224 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
6 Hb_000434_060 0.0981452123 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_012539_100 0.099857786 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
8 Hb_003581_050 0.1023586821 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
9 Hb_043630_030 0.1056830794 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
10 Hb_007257_070 0.1067828488 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
11 Hb_001289_010 0.109018293 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
12 Hb_000574_230 0.1090885611 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
13 Hb_002902_040 0.1127972853 - - PREDICTED: peroxidase 51 [Jatropha curcas]
14 Hb_003071_050 0.1149706789 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
15 Hb_039075_020 0.1153465115 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
16 Hb_005643_040 0.1153571011 - - zinc finger protein, putative [Ricinus communis]
17 Hb_001477_060 0.1166655693 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
18 Hb_003266_090 0.1182663675 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
19 Hb_142026_010 0.1183864395 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
20 Hb_017862_030 0.1184020923 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]

Gene co-expression network

sample Hb_007221_040 Hb_007221_040 Hb_004228_070 Hb_004228_070 Hb_007221_040--Hb_004228_070 Hb_002205_150 Hb_002205_150 Hb_007221_040--Hb_002205_150 Hb_021576_130 Hb_021576_130 Hb_007221_040--Hb_021576_130 Hb_003454_050 Hb_003454_050 Hb_007221_040--Hb_003454_050 Hb_000434_060 Hb_000434_060 Hb_007221_040--Hb_000434_060 Hb_012539_100 Hb_012539_100 Hb_007221_040--Hb_012539_100 Hb_004228_070--Hb_021576_130 Hb_004228_070--Hb_002205_150 Hb_004228_070--Hb_003454_050 Hb_007123_010 Hb_007123_010 Hb_004228_070--Hb_007123_010 Hb_044653_050 Hb_044653_050 Hb_004228_070--Hb_044653_050 Hb_006922_020 Hb_006922_020 Hb_004228_070--Hb_006922_020 Hb_142026_010 Hb_142026_010 Hb_002205_150--Hb_142026_010 Hb_002205_150--Hb_012539_100 Hb_002205_150--Hb_003454_050 Hb_002902_040 Hb_002902_040 Hb_002205_150--Hb_002902_040 Hb_004634_030 Hb_004634_030 Hb_002205_150--Hb_004634_030 Hb_039075_020 Hb_039075_020 Hb_021576_130--Hb_039075_020 Hb_021576_130--Hb_007123_010 Hb_021576_130--Hb_003454_050 Hb_021576_130--Hb_002205_150 Hb_021576_130--Hb_006922_020 Hb_106089_010 Hb_106089_010 Hb_003454_050--Hb_106089_010 Hb_003454_050--Hb_142026_010 Hb_003454_050--Hb_002902_040 Hb_026240_020 Hb_026240_020 Hb_003454_050--Hb_026240_020 Hb_002168_070 Hb_002168_070 Hb_000434_060--Hb_002168_070 Hb_005211_210 Hb_005211_210 Hb_000434_060--Hb_005211_210 Hb_002043_070 Hb_002043_070 Hb_000434_060--Hb_002043_070 Hb_009771_040 Hb_009771_040 Hb_000434_060--Hb_009771_040 Hb_005051_010 Hb_005051_010 Hb_000434_060--Hb_005051_010 Hb_012539_100--Hb_004634_030 Hb_012539_100--Hb_142026_010 Hb_012539_100--Hb_106089_010 Hb_012539_100--Hb_002902_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.35665 4.1736 6.09423 0 0.0751196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.712282 3.86404

CAGE analysis