Hb_007223_010

Information

Type -
Description -
Location Contig7223: 25755-32228
Sequence    

Annotation

kegg
ID rcu:RCOM_0867380
description hypothetical protein
nr
ID XP_002519923.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1Q8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0867380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55727: 28498-28806 , PASA_asmbl_55728: 26971-32164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007223_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007481_030 0.1420101489 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
3 Hb_002370_040 0.160948293 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
4 Hb_000201_040 0.162808102 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
5 Hb_000181_360 0.164523355 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
6 Hb_002805_170 0.1693210049 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
7 Hb_000265_250 0.1715848981 - - auxilin, putative [Ricinus communis]
8 Hb_002997_160 0.1727444577 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
9 Hb_057451_010 0.1780116907 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
10 Hb_000024_070 0.1786142389 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
11 Hb_000483_180 0.1795199342 - - -
12 Hb_119886_040 0.1805106125 - - -
13 Hb_001522_010 0.1811021016 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
14 Hb_002612_010 0.1812878631 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
15 Hb_001195_150 0.1816404653 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
16 Hb_000045_320 0.1825238247 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
17 Hb_005510_010 0.1828734929 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
18 Hb_000640_200 0.184490968 - - hypothetical protein RCOM_1346600 [Ricinus communis]
19 Hb_003710_040 0.1856149478 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
20 Hb_000422_110 0.1856202473 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]

Gene co-expression network

sample Hb_007223_010 Hb_007223_010 Hb_007481_030 Hb_007481_030 Hb_007223_010--Hb_007481_030 Hb_002370_040 Hb_002370_040 Hb_007223_010--Hb_002370_040 Hb_000201_040 Hb_000201_040 Hb_007223_010--Hb_000201_040 Hb_000181_360 Hb_000181_360 Hb_007223_010--Hb_000181_360 Hb_002805_170 Hb_002805_170 Hb_007223_010--Hb_002805_170 Hb_000265_250 Hb_000265_250 Hb_007223_010--Hb_000265_250 Hb_007481_030--Hb_002370_040 Hb_143960_010 Hb_143960_010 Hb_007481_030--Hb_143960_010 Hb_167381_020 Hb_167381_020 Hb_007481_030--Hb_167381_020 Hb_000120_520 Hb_000120_520 Hb_007481_030--Hb_000120_520 Hb_002997_160 Hb_002997_160 Hb_007481_030--Hb_002997_160 Hb_012395_080 Hb_012395_080 Hb_002370_040--Hb_012395_080 Hb_003895_030 Hb_003895_030 Hb_002370_040--Hb_003895_030 Hb_000136_190 Hb_000136_190 Hb_002370_040--Hb_000136_190 Hb_100525_010 Hb_100525_010 Hb_002370_040--Hb_100525_010 Hb_001195_150 Hb_001195_150 Hb_000201_040--Hb_001195_150 Hb_000163_280 Hb_000163_280 Hb_000201_040--Hb_000163_280 Hb_030627_040 Hb_030627_040 Hb_000201_040--Hb_030627_040 Hb_000201_040--Hb_100525_010 Hb_057451_010 Hb_057451_010 Hb_000201_040--Hb_057451_010 Hb_001231_030 Hb_001231_030 Hb_000181_360--Hb_001231_030 Hb_000327_080 Hb_000327_080 Hb_000181_360--Hb_000327_080 Hb_004899_070 Hb_004899_070 Hb_000181_360--Hb_004899_070 Hb_000181_360--Hb_000265_250 Hb_000062_470 Hb_000062_470 Hb_000181_360--Hb_000062_470 Hb_000753_100 Hb_000753_100 Hb_000181_360--Hb_000753_100 Hb_012184_050 Hb_012184_050 Hb_002805_170--Hb_012184_050 Hb_007951_100 Hb_007951_100 Hb_002805_170--Hb_007951_100 Hb_001703_130 Hb_001703_130 Hb_002805_170--Hb_001703_130 Hb_010883_080 Hb_010883_080 Hb_002805_170--Hb_010883_080 Hb_000045_320 Hb_000045_320 Hb_002805_170--Hb_000045_320 Hb_002612_010 Hb_002612_010 Hb_002805_170--Hb_002612_010 Hb_011465_030 Hb_011465_030 Hb_000265_250--Hb_011465_030 Hb_002477_150 Hb_002477_150 Hb_000265_250--Hb_002477_150 Hb_148209_020 Hb_148209_020 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_001247_230 Hb_001247_230 Hb_000265_250--Hb_001247_230 Hb_002849_080 Hb_002849_080 Hb_000265_250--Hb_002849_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76012 12.0804 5.09702 1.85489 13.0676 10.9067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.461018 0.362733 0.975698 2.34087 1.89252

CAGE analysis