Hb_007229_010

Information

Type -
Description -
Location Contig7229: 11820-12245
Sequence    

Annotation

kegg
ID pop:POPTR_0014s04480g
description hypothetical protein
nr
ID XP_011031854.1
description PREDICTED: uncharacterized protein LOC105130855 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FNY9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s04480g PE=4 SV=1
Gene Ontology
ID GO:0016787
description PREDICTED: uncharacterized protein LOC105130855

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007229_010 0.0 - - PREDICTED: uncharacterized protein LOC105130855 [Populus euphratica]
2 Hb_001246_140 0.2541788805 - - -
3 Hb_006831_060 0.2571089694 - - hypothetical protein JCGZ_16419 [Jatropha curcas]
4 Hb_002232_070 0.3054188839 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Malus domestica]
5 Hb_002030_120 0.3190847178 - - -
6 Hb_076233_030 0.3298529418 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
7 Hb_028071_010 0.3312236843 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
8 Hb_000365_170 0.3316289578 - - PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]
9 Hb_013016_010 0.3330212316 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005679_080 0.335693052 - - PREDICTED: PH-interacting protein-like [Populus euphratica]
11 Hb_000521_180 0.3360302173 - - PREDICTED: uncharacterized protein LOC105650335 [Jatropha curcas]
12 Hb_003680_110 0.3363706629 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000172_490 0.3365659899 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
14 Hb_073973_030 0.3440307298 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
15 Hb_000653_020 0.3481731563 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
16 Hb_001102_190 0.3512723784 - - PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]
17 Hb_002837_100 0.3537754201 - - PREDICTED: F-box protein PP2-B15-like [Jatropha curcas]
18 Hb_006230_040 0.3569177631 - - kinase, putative [Ricinus communis]
19 Hb_074792_010 0.3622829753 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
20 Hb_000025_380 0.3623072795 - - hypothetical protein JCGZ_22787 [Jatropha curcas]

Gene co-expression network

sample Hb_007229_010 Hb_007229_010 Hb_001246_140 Hb_001246_140 Hb_007229_010--Hb_001246_140 Hb_006831_060 Hb_006831_060 Hb_007229_010--Hb_006831_060 Hb_002232_070 Hb_002232_070 Hb_007229_010--Hb_002232_070 Hb_002030_120 Hb_002030_120 Hb_007229_010--Hb_002030_120 Hb_076233_030 Hb_076233_030 Hb_007229_010--Hb_076233_030 Hb_028071_010 Hb_028071_010 Hb_007229_010--Hb_028071_010 Hb_107281_010 Hb_107281_010 Hb_001246_140--Hb_107281_010 Hb_002450_140 Hb_002450_140 Hb_001246_140--Hb_002450_140 Hb_002107_090 Hb_002107_090 Hb_001246_140--Hb_002107_090 Hb_001246_140--Hb_028071_010 Hb_000922_420 Hb_000922_420 Hb_001246_140--Hb_000922_420 Hb_000025_380 Hb_000025_380 Hb_006831_060--Hb_000025_380 Hb_001999_270 Hb_001999_270 Hb_006831_060--Hb_001999_270 Hb_153258_060 Hb_153258_060 Hb_006831_060--Hb_153258_060 Hb_015183_040 Hb_015183_040 Hb_006831_060--Hb_015183_040 Hb_005489_030 Hb_005489_030 Hb_006831_060--Hb_005489_030 Hb_045481_010 Hb_045481_010 Hb_002232_070--Hb_045481_010 Hb_007527_030 Hb_007527_030 Hb_002232_070--Hb_007527_030 Hb_013016_010 Hb_013016_010 Hb_002232_070--Hb_013016_010 Hb_002232_070--Hb_002030_120 Hb_002837_100 Hb_002837_100 Hb_002232_070--Hb_002837_100 Hb_002030_120--Hb_076233_030 Hb_014497_030 Hb_014497_030 Hb_002030_120--Hb_014497_030 Hb_000189_390 Hb_000189_390 Hb_002030_120--Hb_000189_390 Hb_000985_040 Hb_000985_040 Hb_002030_120--Hb_000985_040 Hb_000803_090 Hb_000803_090 Hb_002030_120--Hb_000803_090 Hb_002249_040 Hb_002249_040 Hb_002030_120--Hb_002249_040 Hb_076233_030--Hb_000189_390 Hb_076233_030--Hb_014497_030 Hb_076233_030--Hb_000803_090 Hb_002960_110 Hb_002960_110 Hb_076233_030--Hb_002960_110 Hb_003529_180 Hb_003529_180 Hb_076233_030--Hb_003529_180 Hb_028071_010--Hb_000922_420 Hb_006671_020 Hb_006671_020 Hb_028071_010--Hb_006671_020 Hb_004342_020 Hb_004342_020 Hb_028071_010--Hb_004342_020 Hb_002067_010 Hb_002067_010 Hb_028071_010--Hb_002067_010 Hb_000424_020 Hb_000424_020 Hb_028071_010--Hb_000424_020 Hb_028071_010--Hb_013016_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0972039 0.13055 0.615218 0 0.070657 0.187886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.177095 0 0 0.0589531 0

CAGE analysis