Hb_007229_050

Information

Type -
Description -
Location Contig7229: 38131-44293
Sequence    

Annotation

kegg
ID rcu:RCOM_1608620
description Palmitoyl-protein thioesterase 1 precursor, putative (EC:3.1.2.22)
nr
ID XP_012083658.1
description PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
swissprot
ID Q20390
description Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2
trembl
ID A0A067KAI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14595 PE=4 SV=1
Gene Ontology
ID GO:0005773
description palmitoyl-protein thioesterase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007229_050 0.0 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
2 Hb_006185_030 0.076401068 - - threonine synthase, putative [Ricinus communis]
3 Hb_004129_010 0.083217975 - - aspartate aminotransferase, putative [Ricinus communis]
4 Hb_001235_130 0.0857820482 - - -
5 Hb_098533_010 0.0889124442 - - hypothetical protein L484_003492 [Morus notabilis]
6 Hb_000157_140 0.0903546011 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_000256_160 0.0920205024 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
8 Hb_029584_100 0.0963102436 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
9 Hb_009535_030 0.1019602654 - - CP2 [Hevea brasiliensis]
10 Hb_009803_020 0.1055976403 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
11 Hb_004030_060 0.1062017183 - - receptor protein kinase zmpk1, putative [Ricinus communis]
12 Hb_011174_080 0.1064147817 - - PREDICTED: sulfite oxidase [Jatropha curcas]
13 Hb_000861_100 0.1067330882 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
14 Hb_124315_010 0.1080477177 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
15 Hb_005588_120 0.1081770033 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003030_010 0.1087697385 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
17 Hb_000683_050 0.11137642 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
18 Hb_012053_020 0.1115949405 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
19 Hb_001473_170 0.1116690516 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
20 Hb_001754_050 0.1137245632 - - protein arginine n-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007229_050 Hb_007229_050 Hb_006185_030 Hb_006185_030 Hb_007229_050--Hb_006185_030 Hb_004129_010 Hb_004129_010 Hb_007229_050--Hb_004129_010 Hb_001235_130 Hb_001235_130 Hb_007229_050--Hb_001235_130 Hb_098533_010 Hb_098533_010 Hb_007229_050--Hb_098533_010 Hb_000157_140 Hb_000157_140 Hb_007229_050--Hb_000157_140 Hb_000256_160 Hb_000256_160 Hb_007229_050--Hb_000256_160 Hb_009803_020 Hb_009803_020 Hb_006185_030--Hb_009803_020 Hb_001040_150 Hb_001040_150 Hb_006185_030--Hb_001040_150 Hb_006185_030--Hb_001235_130 Hb_006185_030--Hb_098533_010 Hb_011174_080 Hb_011174_080 Hb_006185_030--Hb_011174_080 Hb_005588_120 Hb_005588_120 Hb_004129_010--Hb_005588_120 Hb_001754_050 Hb_001754_050 Hb_004129_010--Hb_001754_050 Hb_004129_010--Hb_000256_160 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010 Hb_001235_130--Hb_011174_080 Hb_001235_130--Hb_000256_160 Hb_005854_040 Hb_005854_040 Hb_001235_130--Hb_005854_040 Hb_001235_130--Hb_005588_120 Hb_009535_030 Hb_009535_030 Hb_001235_130--Hb_009535_030 Hb_098533_010--Hb_009803_020 Hb_007317_020 Hb_007317_020 Hb_098533_010--Hb_007317_020 Hb_001473_170 Hb_001473_170 Hb_098533_010--Hb_001473_170 Hb_098533_010--Hb_009535_030 Hb_004030_060 Hb_004030_060 Hb_000157_140--Hb_004030_060 Hb_007537_030 Hb_007537_030 Hb_000157_140--Hb_007537_030 Hb_000157_140--Hb_007317_020 Hb_000157_140--Hb_011174_080 Hb_000570_020 Hb_000570_020 Hb_000157_140--Hb_000570_020 Hb_003226_090 Hb_003226_090 Hb_000256_160--Hb_003226_090 Hb_000094_150 Hb_000094_150 Hb_000256_160--Hb_000094_150 Hb_000256_160--Hb_005588_120 Hb_002010_090 Hb_002010_090 Hb_000256_160--Hb_002010_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.651866 3.6508 4.26412 6.69084 0.520696 0.662084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40448 1.55273 1.16974 6.59625 7.00416

CAGE analysis