Hb_007229_060

Information

Type -
Description -
Location Contig7229: 45363-47183
Sequence    

Annotation

kegg
ID vvi:100256428
description pentatricopeptide repeat-containing protein At2g44880
nr
ID XP_012083657.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
swissprot
ID Q1PEU4
description Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
trembl
ID A0A067K1C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14594 PE=4 SV=1
Gene Ontology
ID GO:0098599
description pentatricopeptide repeat-containing protein at2g44880

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55739: 45572-45782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007229_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
2 Hb_000983_100 0.0669107167 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
3 Hb_002307_090 0.0762471075 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
4 Hb_000861_040 0.0787585319 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
5 Hb_002326_030 0.0821309758 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
6 Hb_002794_030 0.0851910671 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
7 Hb_001981_090 0.0924202453 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
8 Hb_025087_010 0.0941245061 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
9 Hb_002527_070 0.0947408518 - - axonemal dynein light chain, putative [Ricinus communis]
10 Hb_005000_290 0.0952712702 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
11 Hb_000156_100 0.0958906425 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
12 Hb_000836_070 0.0961812239 - - protein binding protein, putative [Ricinus communis]
13 Hb_008085_040 0.0976286636 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
14 Hb_009026_050 0.0976364119 - - vacuolar ATPase F subunit [Hevea brasiliensis]
15 Hb_001478_050 0.0987603114 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
16 Hb_012522_030 0.1003762162 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_001473_130 0.1005390462 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
18 Hb_002392_040 0.100592939 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008695_190 0.1014585162 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
20 Hb_026988_020 0.1023016746 - - outward rectifying K+ channel [Hevea brasiliensis]

Gene co-expression network

sample Hb_007229_060 Hb_007229_060 Hb_000983_100 Hb_000983_100 Hb_007229_060--Hb_000983_100 Hb_002307_090 Hb_002307_090 Hb_007229_060--Hb_002307_090 Hb_000861_040 Hb_000861_040 Hb_007229_060--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_007229_060--Hb_002326_030 Hb_002794_030 Hb_002794_030 Hb_007229_060--Hb_002794_030 Hb_001981_090 Hb_001981_090 Hb_007229_060--Hb_001981_090 Hb_001473_130 Hb_001473_130 Hb_000983_100--Hb_001473_130 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_002025_320 Hb_002025_320 Hb_000983_100--Hb_002025_320 Hb_026988_020 Hb_026988_020 Hb_000983_100--Hb_026988_020 Hb_002527_070 Hb_002527_070 Hb_000983_100--Hb_002527_070 Hb_001946_320 Hb_001946_320 Hb_002307_090--Hb_001946_320 Hb_001232_130 Hb_001232_130 Hb_002307_090--Hb_001232_130 Hb_002307_090--Hb_000861_040 Hb_005000_290 Hb_005000_290 Hb_002307_090--Hb_005000_290 Hb_002291_030 Hb_002291_030 Hb_002307_090--Hb_002291_030 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_000861_040--Hb_002326_030 Hb_000861_040--Hb_002527_070 Hb_000861_040--Hb_026988_020 Hb_000861_040--Hb_000983_100 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_012522_030 Hb_012522_030 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_002326_030--Hb_001473_130 Hb_000156_100 Hb_000156_100 Hb_002794_030--Hb_000156_100 Hb_000671_150 Hb_000671_150 Hb_002794_030--Hb_000671_150 Hb_002794_030--Hb_000983_100 Hb_000196_090 Hb_000196_090 Hb_002794_030--Hb_000196_090 Hb_002794_030--Hb_002527_070 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_001981_090--Hb_001366_220 Hb_000809_040 Hb_000809_040 Hb_001981_090--Hb_000809_040 Hb_001981_090--Hb_000983_100 Hb_002357_040 Hb_002357_040 Hb_001981_090--Hb_002357_040 Hb_000805_090 Hb_000805_090 Hb_001981_090--Hb_000805_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7953 3.12633 1.23252 1.30903 8.90063 11.7711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.685 17.1709 20.9537 2.74769 0.872369

CAGE analysis