Hb_007229_070

Information

Type -
Description -
Location Contig7229: 53032-54142
Sequence    

Annotation

kegg
ID rcu:RCOM_1608590
description hypothetical protein
nr
ID XP_012083656.1
description PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14592 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55741: 53766-54288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007229_070 0.0 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
2 Hb_001269_320 0.0870393341 - - 40S ribosomal protein S12A [Hevea brasiliensis]
3 Hb_001369_660 0.0907746308 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
4 Hb_004440_050 0.0923707619 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
5 Hb_011828_050 0.1073847986 - - 40S ribosomal protein S23, putative [Ricinus communis]
6 Hb_000157_030 0.1133522979 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
7 Hb_003266_050 0.1174891461 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
8 Hb_003874_020 0.1181425697 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
9 Hb_042083_050 0.1200497499 - - 60S ribosomal protein L11, putative [Ricinus communis]
10 Hb_009787_010 0.1205470686 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
11 Hb_004502_020 0.1227782162 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
12 Hb_168054_010 0.1237631252 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
13 Hb_001946_210 0.1248123253 - - ribosomal protein l7ae, putative [Ricinus communis]
14 Hb_029921_040 0.1248629599 - - conserved hypothetical protein [Ricinus communis]
15 Hb_175215_010 0.1252509973 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
16 Hb_002007_180 0.1256492303 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
17 Hb_000065_080 0.1264985039 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
18 Hb_114343_010 0.1266870634 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
19 Hb_001279_070 0.1287243036 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
20 Hb_096490_020 0.1288015012 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]

Gene co-expression network

sample Hb_007229_070 Hb_007229_070 Hb_001269_320 Hb_001269_320 Hb_007229_070--Hb_001269_320 Hb_001369_660 Hb_001369_660 Hb_007229_070--Hb_001369_660 Hb_004440_050 Hb_004440_050 Hb_007229_070--Hb_004440_050 Hb_011828_050 Hb_011828_050 Hb_007229_070--Hb_011828_050 Hb_000157_030 Hb_000157_030 Hb_007229_070--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_007229_070--Hb_003266_050 Hb_001269_320--Hb_003266_050 Hb_001269_320--Hb_004440_050 Hb_001269_320--Hb_001369_660 Hb_003011_040 Hb_003011_040 Hb_001269_320--Hb_003011_040 Hb_001279_070 Hb_001279_070 Hb_001269_320--Hb_001279_070 Hb_001369_660--Hb_004440_050 Hb_000163_160 Hb_000163_160 Hb_001369_660--Hb_000163_160 Hb_168054_010 Hb_168054_010 Hb_001369_660--Hb_168054_010 Hb_010180_020 Hb_010180_020 Hb_001369_660--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_001369_660--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_001369_660--Hb_003687_110 Hb_002411_170 Hb_002411_170 Hb_004440_050--Hb_002411_170 Hb_009767_120 Hb_009767_120 Hb_004440_050--Hb_009767_120 Hb_004440_050--Hb_001604_080 Hb_003874_020 Hb_003874_020 Hb_004440_050--Hb_003874_020 Hb_004440_050--Hb_010180_020 Hb_043302_010 Hb_043302_010 Hb_011828_050--Hb_043302_010 Hb_011828_050--Hb_009767_120 Hb_003746_040 Hb_003746_040 Hb_011828_050--Hb_003746_040 Hb_004944_010 Hb_004944_010 Hb_011828_050--Hb_004944_010 Hb_000742_140 Hb_000742_140 Hb_011828_050--Hb_000742_140 Hb_011828_050--Hb_003874_020 Hb_010691_060 Hb_010691_060 Hb_000157_030--Hb_010691_060 Hb_001766_150 Hb_001766_150 Hb_000157_030--Hb_001766_150 Hb_002107_160 Hb_002107_160 Hb_000157_030--Hb_002107_160 Hb_002391_300 Hb_002391_300 Hb_000157_030--Hb_002391_300 Hb_000157_030--Hb_004440_050 Hb_000157_030--Hb_003266_050 Hb_005389_150 Hb_005389_150 Hb_003266_050--Hb_005389_150 Hb_000815_040 Hb_000815_040 Hb_003266_050--Hb_000815_040 Hb_003266_050--Hb_010691_060 Hb_001278_110 Hb_001278_110 Hb_003266_050--Hb_001278_110 Hb_002890_140 Hb_002890_140 Hb_003266_050--Hb_002890_140 Hb_003058_130 Hb_003058_130 Hb_003266_050--Hb_003058_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8346 13.4567 21.3774 15.8575 26.6042 76.9624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4347 72.4127 14.2038 16.5169 8.79086

CAGE analysis