Hb_007237_020

Information

Type -
Description -
Location Contig7237: 15292-18740
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13760g
description POPTRDRAFT_554469; hypothetical protein
nr
ID XP_012086756.1
description PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
swissprot
ID O82509
description Protein trichome birefringence-like 23 OS=Arabidopsis thaliana GN=TBL23 PE=2 SV=1
trembl
ID B9GXG1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13760g PE=4 SV=1
Gene Ontology
ID GO:0003746
description protein trichome birefringence-like 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55798: 15683-15995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007237_020 0.0 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
2 Hb_000086_470 0.0630450599 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
3 Hb_000627_040 0.0676722534 - - leucine-rich repeat protein, putative [Ricinus communis]
4 Hb_002053_180 0.0817151722 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
5 Hb_002490_060 0.0863610703 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
6 Hb_002817_030 0.0874918234 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
7 Hb_000120_340 0.0879463165 - - Cucumisin precursor, putative [Ricinus communis]
8 Hb_001571_080 0.0961189594 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
9 Hb_121313_010 0.100836282 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
10 Hb_007313_030 0.10142971 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
11 Hb_004202_030 0.1029151734 - - PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]
12 Hb_019973_010 0.1092147306 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
13 Hb_000199_040 0.1109834878 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_001157_050 0.1131873256 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
15 Hb_008304_010 0.113205967 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
16 Hb_001366_290 0.1133037786 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
17 Hb_004218_140 0.1133171681 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
18 Hb_006922_020 0.1139760088 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
19 Hb_002301_400 0.1140428598 - - structural constituent of cell wall, putative [Ricinus communis]
20 Hb_005730_110 0.1144145807 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]

Gene co-expression network

sample Hb_007237_020 Hb_007237_020 Hb_000086_470 Hb_000086_470 Hb_007237_020--Hb_000086_470 Hb_000627_040 Hb_000627_040 Hb_007237_020--Hb_000627_040 Hb_002053_180 Hb_002053_180 Hb_007237_020--Hb_002053_180 Hb_002490_060 Hb_002490_060 Hb_007237_020--Hb_002490_060 Hb_002817_030 Hb_002817_030 Hb_007237_020--Hb_002817_030 Hb_000120_340 Hb_000120_340 Hb_007237_020--Hb_000120_340 Hb_000086_470--Hb_000120_340 Hb_004202_030 Hb_004202_030 Hb_000086_470--Hb_004202_030 Hb_007313_030 Hb_007313_030 Hb_000086_470--Hb_007313_030 Hb_007632_160 Hb_007632_160 Hb_000086_470--Hb_007632_160 Hb_000086_470--Hb_000627_040 Hb_000627_040--Hb_002490_060 Hb_121313_010 Hb_121313_010 Hb_000627_040--Hb_121313_010 Hb_005730_110 Hb_005730_110 Hb_000627_040--Hb_005730_110 Hb_000627_040--Hb_002053_180 Hb_006922_020 Hb_006922_020 Hb_000627_040--Hb_006922_020 Hb_000199_040 Hb_000199_040 Hb_002053_180--Hb_000199_040 Hb_002053_180--Hb_006922_020 Hb_000836_090 Hb_000836_090 Hb_002053_180--Hb_000836_090 Hb_002053_180--Hb_002490_060 Hb_002490_060--Hb_006922_020 Hb_001366_290 Hb_001366_290 Hb_002490_060--Hb_001366_290 Hb_006196_030 Hb_006196_030 Hb_002490_060--Hb_006196_030 Hb_007123_010 Hb_007123_010 Hb_002490_060--Hb_007123_010 Hb_027337_010 Hb_027337_010 Hb_002817_030--Hb_027337_010 Hb_004117_280 Hb_004117_280 Hb_002817_030--Hb_004117_280 Hb_000914_140 Hb_000914_140 Hb_002817_030--Hb_000914_140 Hb_002311_500 Hb_002311_500 Hb_002817_030--Hb_002311_500 Hb_003573_050 Hb_003573_050 Hb_002817_030--Hb_003573_050 Hb_003666_070 Hb_003666_070 Hb_000120_340--Hb_003666_070 Hb_019973_010 Hb_019973_010 Hb_000120_340--Hb_019973_010 Hb_000120_340--Hb_007632_160 Hb_011671_050 Hb_011671_050 Hb_000120_340--Hb_011671_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15092 5.60459 30.3224 17.3998 0.0710802 0.0224919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.79633 10.2334

CAGE analysis