Hb_007237_060

Information

Type -
Description -
Location Contig7237: 57888-58236
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55801: 57893-70012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007237_060 0.0 - - -
2 Hb_001856_260 0.088866475 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
3 Hb_001675_020 0.0962279503 - - -
4 Hb_000327_100 0.1020595426 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
5 Hb_000086_530 0.1026344594 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000237_060 0.1046365294 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
7 Hb_000685_100 0.1091150561 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
8 Hb_005116_040 0.1254412065 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
9 Hb_000477_020 0.1272351151 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
10 Hb_001210_120 0.12884636 - - hypothetical protein JCGZ_06226 [Jatropha curcas]
11 Hb_025557_080 0.1309399284 transcription factor TF Family: zf-HD -
12 Hb_000659_050 0.1340214649 - - PREDICTED: basic blue protein-like [Jatropha curcas]
13 Hb_025557_070 0.1345123173 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
14 Hb_000344_030 0.1445570548 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
15 Hb_025161_060 0.1532646162 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
16 Hb_002869_090 0.1541382379 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
17 Hb_049438_020 0.1561801691 - - PREDICTED: peroxidase 20 [Jatropha curcas]
18 Hb_000910_030 0.1567306081 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000034_060 0.1567555086 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
20 Hb_007403_100 0.1628275919 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]

Gene co-expression network

sample Hb_007237_060 Hb_007237_060 Hb_001856_260 Hb_001856_260 Hb_007237_060--Hb_001856_260 Hb_001675_020 Hb_001675_020 Hb_007237_060--Hb_001675_020 Hb_000327_100 Hb_000327_100 Hb_007237_060--Hb_000327_100 Hb_000086_530 Hb_000086_530 Hb_007237_060--Hb_000086_530 Hb_000237_060 Hb_000237_060 Hb_007237_060--Hb_000237_060 Hb_000685_100 Hb_000685_100 Hb_007237_060--Hb_000685_100 Hb_001856_260--Hb_000237_060 Hb_001856_260--Hb_000086_530 Hb_001856_260--Hb_000327_100 Hb_049438_020 Hb_049438_020 Hb_001856_260--Hb_049438_020 Hb_000163_170 Hb_000163_170 Hb_001856_260--Hb_000163_170 Hb_001675_020--Hb_000327_100 Hb_000659_050 Hb_000659_050 Hb_001675_020--Hb_000659_050 Hb_000477_020 Hb_000477_020 Hb_001675_020--Hb_000477_020 Hb_007403_100 Hb_007403_100 Hb_001675_020--Hb_007403_100 Hb_002869_090 Hb_002869_090 Hb_001675_020--Hb_002869_090 Hb_000327_100--Hb_000659_050 Hb_000327_100--Hb_002869_090 Hb_000352_360 Hb_000352_360 Hb_000327_100--Hb_000352_360 Hb_000327_100--Hb_000477_020 Hb_000086_530--Hb_000237_060 Hb_000086_530--Hb_000327_100 Hb_005144_150 Hb_005144_150 Hb_000086_530--Hb_005144_150 Hb_001616_010 Hb_001616_010 Hb_000086_530--Hb_001616_010 Hb_002020_010 Hb_002020_010 Hb_000237_060--Hb_002020_010 Hb_133926_010 Hb_133926_010 Hb_000237_060--Hb_133926_010 Hb_011081_010 Hb_011081_010 Hb_000237_060--Hb_011081_010 Hb_005116_040 Hb_005116_040 Hb_000685_100--Hb_005116_040 Hb_000685_100--Hb_049438_020 Hb_000034_060 Hb_000034_060 Hb_000685_100--Hb_000034_060 Hb_000685_100--Hb_001856_260 Hb_000685_100--Hb_000237_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.213129 0.308952 12.0021 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.8862 2.01924

CAGE analysis