Hb_007237_080

Information

Type -
Description -
Location Contig7237: 69005-72444
Sequence    

Annotation

kegg
ID rcu:RCOM_1691270
description amino acid transporter, putative
nr
ID XP_002509935.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q8L4X4
description Probable GABA transporter 2 OS=Arabidopsis thaliana GN=At5g41800 PE=1 SV=1
trembl
ID B9RCQ1
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_1691270 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable gaba transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55801: 57893-70012 , PASA_asmbl_55804: 70013-71138 , PASA_asmbl_55805: 71390-72417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007237_080 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_026144_040 0.0637639578 - - -
3 Hb_002370_050 0.0813205021 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
4 Hb_000162_070 0.08369774 - - phospholipase C, putative [Ricinus communis]
5 Hb_001269_400 0.086099341 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
6 Hb_002811_110 0.0924396603 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
7 Hb_000571_060 0.0979508873 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
8 Hb_002151_020 0.098924658 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
9 Hb_149055_010 0.1013631553 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
10 Hb_000181_260 0.1052044247 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
11 Hb_014361_040 0.1055442707 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_008598_010 0.1101905914 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
13 Hb_009641_040 0.1119250284 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
14 Hb_001117_180 0.1123498306 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
15 Hb_002553_070 0.1129349657 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
16 Hb_002809_080 0.116480052 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002902_040 0.1182264872 - - PREDICTED: peroxidase 51 [Jatropha curcas]
18 Hb_007479_080 0.1186795776 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
19 Hb_000342_020 0.1189481926 - - bel1 homeotic protein, putative [Ricinus communis]
20 Hb_031224_010 0.1196180502 - - -

Gene co-expression network

sample Hb_007237_080 Hb_007237_080 Hb_026144_040 Hb_026144_040 Hb_007237_080--Hb_026144_040 Hb_002370_050 Hb_002370_050 Hb_007237_080--Hb_002370_050 Hb_000162_070 Hb_000162_070 Hb_007237_080--Hb_000162_070 Hb_001269_400 Hb_001269_400 Hb_007237_080--Hb_001269_400 Hb_002811_110 Hb_002811_110 Hb_007237_080--Hb_002811_110 Hb_000571_060 Hb_000571_060 Hb_007237_080--Hb_000571_060 Hb_008598_010 Hb_008598_010 Hb_026144_040--Hb_008598_010 Hb_026144_040--Hb_000162_070 Hb_000045_080 Hb_000045_080 Hb_026144_040--Hb_000045_080 Hb_002598_020 Hb_002598_020 Hb_026144_040--Hb_002598_020 Hb_002151_020 Hb_002151_020 Hb_026144_040--Hb_002151_020 Hb_002809_080 Hb_002809_080 Hb_002370_050--Hb_002809_080 Hb_031224_010 Hb_031224_010 Hb_002370_050--Hb_031224_010 Hb_000329_010 Hb_000329_010 Hb_002370_050--Hb_000329_010 Hb_027405_010 Hb_027405_010 Hb_002370_050--Hb_027405_010 Hb_002370_050--Hb_026144_040 Hb_000162_070--Hb_008598_010 Hb_000162_070--Hb_000045_080 Hb_000991_080 Hb_000991_080 Hb_000162_070--Hb_000991_080 Hb_000162_070--Hb_002811_110 Hb_149055_010 Hb_149055_010 Hb_001269_400--Hb_149055_010 Hb_001269_400--Hb_002151_020 Hb_002902_040 Hb_002902_040 Hb_001269_400--Hb_002902_040 Hb_000473_100 Hb_000473_100 Hb_001269_400--Hb_000473_100 Hb_000342_020 Hb_000342_020 Hb_001269_400--Hb_000342_020 Hb_002811_110--Hb_000571_060 Hb_000181_260 Hb_000181_260 Hb_002811_110--Hb_000181_260 Hb_001117_180 Hb_001117_180 Hb_002811_110--Hb_001117_180 Hb_008021_040 Hb_008021_040 Hb_002811_110--Hb_008021_040 Hb_002236_010 Hb_002236_010 Hb_000571_060--Hb_002236_010 Hb_002553_070 Hb_002553_070 Hb_000571_060--Hb_002553_070 Hb_000571_060--Hb_000181_260 Hb_008725_020 Hb_008725_020 Hb_000571_060--Hb_008725_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.81079 5.37923 19.5327 0.0140358 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.39072 7.90147

CAGE analysis