Hb_007245_030

Information

Type -
Description -
Location Contig7245: 13320-15468
Sequence    

Annotation

kegg
ID rcu:RCOM_0528940
description hypothetical protein
nr
ID XP_002525387.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHB8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0528940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55821: 13360-14948 , PASA_asmbl_55822: 13360-14948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007245_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005914_100 0.0538155329 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000614_200 0.0583973823 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
4 Hb_001168_030 0.0662533173 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
5 Hb_000316_070 0.0685129737 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
6 Hb_002928_150 0.0710112006 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
7 Hb_004225_160 0.0710809949 - - PREDICTED: kiwellin-like [Jatropha curcas]
8 Hb_004097_030 0.0712571526 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
9 Hb_000856_390 0.0718629144 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003776_050 0.0726368666 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
11 Hb_011849_010 0.0728907503 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
12 Hb_001699_070 0.0735092245 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003398_050 0.0754943808 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
14 Hb_000116_050 0.0759964959 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
15 Hb_006573_310 0.0786079493 - - Tellurite resistance protein tehA, putative [Ricinus communis]
16 Hb_000060_030 0.0791017723 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
17 Hb_001279_110 0.0805751361 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
18 Hb_000890_140 0.0823856307 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
19 Hb_000038_070 0.0824469147 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004174_030 0.0868343764 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]

Gene co-expression network

sample Hb_007245_030 Hb_007245_030 Hb_005914_100 Hb_005914_100 Hb_007245_030--Hb_005914_100 Hb_000614_200 Hb_000614_200 Hb_007245_030--Hb_000614_200 Hb_001168_030 Hb_001168_030 Hb_007245_030--Hb_001168_030 Hb_000316_070 Hb_000316_070 Hb_007245_030--Hb_000316_070 Hb_002928_150 Hb_002928_150 Hb_007245_030--Hb_002928_150 Hb_004225_160 Hb_004225_160 Hb_007245_030--Hb_004225_160 Hb_004097_030 Hb_004097_030 Hb_005914_100--Hb_004097_030 Hb_005914_100--Hb_002928_150 Hb_004174_030 Hb_004174_030 Hb_005914_100--Hb_004174_030 Hb_003398_050 Hb_003398_050 Hb_005914_100--Hb_003398_050 Hb_056196_020 Hb_056196_020 Hb_005914_100--Hb_056196_020 Hb_003776_050 Hb_003776_050 Hb_000614_200--Hb_003776_050 Hb_011849_010 Hb_011849_010 Hb_000614_200--Hb_011849_010 Hb_002374_090 Hb_002374_090 Hb_000614_200--Hb_002374_090 Hb_119044_040 Hb_119044_040 Hb_000614_200--Hb_119044_040 Hb_000614_200--Hb_003398_050 Hb_004963_020 Hb_004963_020 Hb_001168_030--Hb_004963_020 Hb_001168_030--Hb_000316_070 Hb_001168_030--Hb_005914_100 Hb_001168_030--Hb_000614_200 Hb_001168_030--Hb_003776_050 Hb_000316_070--Hb_011849_010 Hb_004635_020 Hb_004635_020 Hb_000316_070--Hb_004635_020 Hb_000316_070--Hb_004963_020 Hb_000316_070--Hb_000614_200 Hb_004032_390 Hb_004032_390 Hb_000316_070--Hb_004032_390 Hb_002928_150--Hb_003398_050 Hb_002928_150--Hb_003776_050 Hb_002928_150--Hb_004097_030 Hb_001220_020 Hb_001220_020 Hb_002928_150--Hb_001220_020 Hb_002928_150--Hb_004174_030 Hb_000038_070 Hb_000038_070 Hb_004225_160--Hb_000038_070 Hb_004422_030 Hb_004422_030 Hb_004225_160--Hb_004422_030 Hb_004225_160--Hb_000614_200 Hb_006573_310 Hb_006573_310 Hb_004225_160--Hb_006573_310 Hb_027905_040 Hb_027905_040 Hb_004225_160--Hb_027905_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0280718 0.329185 10.7409 4.73904 0.0113259 0.0110369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.459474 0.468717

CAGE analysis