Hb_007248_030

Information

Type -
Description -
Location Contig7248: 30777-34888
Sequence    

Annotation

kegg
ID rcu:RCOM_1405850
description hypothetical protein
nr
ID XP_012071571.1
description PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3U4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04077 PE=4 SV=1
Gene Ontology
ID GO:0004386
description atp-dependent dna helicase pcra

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55824: 30828-34888 , PASA_asmbl_55825: 33637-33735 , PASA_asmbl_55827: 30828-34867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007248_030 0.0 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
2 Hb_004586_060 0.044232433 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
3 Hb_001481_060 0.0473060792 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
4 Hb_001405_210 0.0535001082 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
5 Hb_000702_090 0.0539331445 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
6 Hb_002014_010 0.0562058002 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_001856_180 0.0569103804 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
8 Hb_000345_160 0.0588890308 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
9 Hb_000046_570 0.0590068272 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
10 Hb_002492_010 0.0596397142 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
11 Hb_183433_010 0.0597144003 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
12 Hb_002849_130 0.0612585676 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
13 Hb_004109_320 0.0615112637 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
14 Hb_000365_230 0.0628360399 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
15 Hb_000313_220 0.0652037213 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_000976_140 0.0654119815 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
17 Hb_007062_040 0.0654428512 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
18 Hb_002326_040 0.0656523121 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
19 Hb_033312_040 0.0657196303 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
20 Hb_000019_190 0.0666219683 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]

Gene co-expression network

sample Hb_007248_030 Hb_007248_030 Hb_004586_060 Hb_004586_060 Hb_007248_030--Hb_004586_060 Hb_001481_060 Hb_001481_060 Hb_007248_030--Hb_001481_060 Hb_001405_210 Hb_001405_210 Hb_007248_030--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_007248_030--Hb_000702_090 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_001856_180 Hb_001856_180 Hb_007248_030--Hb_001856_180 Hb_007062_040 Hb_007062_040 Hb_004586_060--Hb_007062_040 Hb_000046_570 Hb_000046_570 Hb_004586_060--Hb_000046_570 Hb_001377_310 Hb_001377_310 Hb_004586_060--Hb_001377_310 Hb_004586_060--Hb_000702_090 Hb_005460_050 Hb_005460_050 Hb_004586_060--Hb_005460_050 Hb_001716_020 Hb_001716_020 Hb_001481_060--Hb_001716_020 Hb_002492_010 Hb_002492_010 Hb_001481_060--Hb_002492_010 Hb_000345_160 Hb_000345_160 Hb_001481_060--Hb_000345_160 Hb_033312_040 Hb_033312_040 Hb_001481_060--Hb_033312_040 Hb_004037_020 Hb_004037_020 Hb_001481_060--Hb_004037_020 Hb_001405_210--Hb_000046_570 Hb_001405_210--Hb_007062_040 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_001405_210--Hb_004586_060 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_023313_040 Hb_023313_040 Hb_000702_090--Hb_023313_040 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030 Hb_000019_190 Hb_000019_190 Hb_002014_010--Hb_000019_190 Hb_004109_320 Hb_004109_320 Hb_002014_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_002014_010--Hb_171900_090 Hb_002014_010--Hb_000702_090 Hb_000365_230 Hb_000365_230 Hb_002014_010--Hb_000365_230 Hb_001856_180--Hb_000345_160 Hb_001856_180--Hb_007062_040 Hb_001856_180--Hb_000702_090 Hb_001856_180--Hb_001377_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.07376 9.63216 10.8507 11.4644 6.62124 8.06647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.98168 7.13286 5.43524 8.49356 8.37319

CAGE analysis