Hb_007253_010

Information

Type -
Description -
Location Contig7253: 9578-11273
Sequence    

Annotation

kegg
ID rcu:RCOM_0420140
description syntaxin, putative
nr
ID XP_002524068.1
description syntaxin, putative [Ricinus communis]
swissprot
ID Q9ZSD4
description Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1
trembl
ID B9SDJ9
description Syntaxin, putative OS=Ricinus communis GN=RCOM_0420140 PE=3 SV=1
Gene Ontology
ID GO:0005622
description syntaxin 121 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55828: 9758-11140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007253_010 0.0 - - syntaxin, putative [Ricinus communis]
2 Hb_159809_050 0.0647824664 - - AT14A, putative [Ricinus communis]
3 Hb_000749_070 0.0747069124 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
4 Hb_013358_020 0.0820199335 - - ccr4-associated factor, putative [Ricinus communis]
5 Hb_004117_170 0.0933531961 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
6 Hb_000035_050 0.1019414498 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
7 Hb_018790_050 0.1101177611 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
8 Hb_001135_030 0.1155847012 - - PREDICTED: interaptin-like [Jatropha curcas]
9 Hb_056196_060 0.1273265176 - - hexokinase [Manihot esculenta]
10 Hb_001246_160 0.1275920417 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
11 Hb_003581_280 0.1302086413 - - KINASE 2B family protein [Populus trichocarpa]
12 Hb_005714_100 0.1322315832 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
13 Hb_001376_010 0.1335305435 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
14 Hb_000421_230 0.134749983 - - retinal degeneration B beta, putative [Ricinus communis]
15 Hb_124677_040 0.1362160876 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
16 Hb_001769_110 0.1400021648 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
17 Hb_000009_200 0.1404153321 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
18 Hb_000445_100 0.1413234562 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
19 Hb_002897_100 0.1440324257 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_002900_120 0.1452066153 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]

Gene co-expression network

sample Hb_007253_010 Hb_007253_010 Hb_159809_050 Hb_159809_050 Hb_007253_010--Hb_159809_050 Hb_000749_070 Hb_000749_070 Hb_007253_010--Hb_000749_070 Hb_013358_020 Hb_013358_020 Hb_007253_010--Hb_013358_020 Hb_004117_170 Hb_004117_170 Hb_007253_010--Hb_004117_170 Hb_000035_050 Hb_000035_050 Hb_007253_010--Hb_000035_050 Hb_018790_050 Hb_018790_050 Hb_007253_010--Hb_018790_050 Hb_159809_050--Hb_000749_070 Hb_159809_050--Hb_013358_020 Hb_003581_280 Hb_003581_280 Hb_159809_050--Hb_003581_280 Hb_159809_050--Hb_000035_050 Hb_001135_030 Hb_001135_030 Hb_159809_050--Hb_001135_030 Hb_000749_070--Hb_013358_020 Hb_001246_160 Hb_001246_160 Hb_000749_070--Hb_001246_160 Hb_000749_070--Hb_004117_170 Hb_000749_070--Hb_000035_050 Hb_013358_020--Hb_000035_050 Hb_013358_020--Hb_004117_170 Hb_013358_020--Hb_018790_050 Hb_084849_010 Hb_084849_010 Hb_013358_020--Hb_084849_010 Hb_004117_170--Hb_000035_050 Hb_004117_170--Hb_018790_050 Hb_001376_010 Hb_001376_010 Hb_004117_170--Hb_001376_010 Hb_005714_100 Hb_005714_100 Hb_000035_050--Hb_005714_100 Hb_000035_050--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_000035_050--Hb_056196_060 Hb_000035_050--Hb_001376_010 Hb_001898_130 Hb_001898_130 Hb_018790_050--Hb_001898_130 Hb_018790_050--Hb_056196_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.04844 114.813 95.862 87.0432 20.2019 11.28
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.8559 25.0764 24.8204 19.14 15.8995

CAGE analysis