Hb_007253_030

Information

Type -
Description -
Location Contig7253: 25446-27955
Sequence    

Annotation

kegg
ID pop:POPTR_0006s21650g
description POPTRDRAFT_1080956; hypothetical protein
nr
ID XP_011046433.1
description PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]
swissprot
ID Q39061
description RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1
trembl
ID B9H9L3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s21650g PE=4 SV=2
Gene Ontology
ID GO:0009507
description 33 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55829: 25302-25521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007253_030 0.0 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]
2 Hb_002799_060 0.1125090864 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
3 Hb_001257_110 0.1326928879 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
4 Hb_000227_260 0.1342467821 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
5 Hb_001691_170 0.1363817513 - - PREDICTED: callose synthase 12-like [Glycine max]
6 Hb_005977_040 0.1367926326 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
7 Hb_003299_060 0.1444596929 - - nitrate transporter, putative [Ricinus communis]
8 Hb_003602_030 0.1449155335 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
9 Hb_000116_090 0.1456160453 - - catalase [Hevea brasiliensis]
10 Hb_037711_010 0.1460319382 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_000334_010 0.1463476656 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
12 Hb_001584_050 0.1474648003 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
13 Hb_186844_010 0.1477007819 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_000027_110 0.1505495687 - - wall-associated kinase, putative [Ricinus communis]
15 Hb_005433_020 0.1608511857 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
16 Hb_074548_010 0.1613096775 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000307_150 0.1627421012 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
18 Hb_004374_100 0.1650227587 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
19 Hb_015824_010 0.1652981081 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
20 Hb_004291_050 0.1661267456 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]

Gene co-expression network

sample Hb_007253_030 Hb_007253_030 Hb_002799_060 Hb_002799_060 Hb_007253_030--Hb_002799_060 Hb_001257_110 Hb_001257_110 Hb_007253_030--Hb_001257_110 Hb_000227_260 Hb_000227_260 Hb_007253_030--Hb_000227_260 Hb_001691_170 Hb_001691_170 Hb_007253_030--Hb_001691_170 Hb_005977_040 Hb_005977_040 Hb_007253_030--Hb_005977_040 Hb_003299_060 Hb_003299_060 Hb_007253_030--Hb_003299_060 Hb_002799_060--Hb_001257_110 Hb_000334_010 Hb_000334_010 Hb_002799_060--Hb_000334_010 Hb_001775_100 Hb_001775_100 Hb_002799_060--Hb_001775_100 Hb_001604_100 Hb_001604_100 Hb_002799_060--Hb_001604_100 Hb_031069_040 Hb_031069_040 Hb_002799_060--Hb_031069_040 Hb_001257_110--Hb_001775_100 Hb_005063_060 Hb_005063_060 Hb_001257_110--Hb_005063_060 Hb_074548_010 Hb_074548_010 Hb_001257_110--Hb_074548_010 Hb_005523_040 Hb_005523_040 Hb_001257_110--Hb_005523_040 Hb_003905_030 Hb_003905_030 Hb_001257_110--Hb_003905_030 Hb_004374_100 Hb_004374_100 Hb_000227_260--Hb_004374_100 Hb_000280_030 Hb_000280_030 Hb_000227_260--Hb_000280_030 Hb_000638_270 Hb_000638_270 Hb_000227_260--Hb_000638_270 Hb_000042_310 Hb_000042_310 Hb_000227_260--Hb_000042_310 Hb_000227_260--Hb_005977_040 Hb_007426_070 Hb_007426_070 Hb_001691_170--Hb_007426_070 Hb_168319_040 Hb_168319_040 Hb_001691_170--Hb_168319_040 Hb_000483_440 Hb_000483_440 Hb_001691_170--Hb_000483_440 Hb_000081_110 Hb_000081_110 Hb_001691_170--Hb_000081_110 Hb_001517_060 Hb_001517_060 Hb_001691_170--Hb_001517_060 Hb_000017_210 Hb_000017_210 Hb_001691_170--Hb_000017_210 Hb_002609_140 Hb_002609_140 Hb_005977_040--Hb_002609_140 Hb_005977_040--Hb_074548_010 Hb_000544_070 Hb_000544_070 Hb_005977_040--Hb_000544_070 Hb_000161_010 Hb_000161_010 Hb_005977_040--Hb_000161_010 Hb_005977_040--Hb_005523_040 Hb_005977_040--Hb_001257_110 Hb_144045_010 Hb_144045_010 Hb_003299_060--Hb_144045_010 Hb_000027_110 Hb_000027_110 Hb_003299_060--Hb_000027_110 Hb_000668_180 Hb_000668_180 Hb_003299_060--Hb_000668_180 Hb_003299_060--Hb_000334_010 Hb_015824_010 Hb_015824_010 Hb_003299_060--Hb_015824_010 Hb_000116_090 Hb_000116_090 Hb_003299_060--Hb_000116_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.053044 0.315666 0.654287 0.144191 0.0142456 0.0286503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0407128 1.54423

CAGE analysis