Hb_007253_040

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig7253: 28610-32826
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06860g
description POPTRDRAFT_576479, POPTRDRAFT_576480; hypothetical protein
nr
ID XP_012074293.1
description PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
swissprot
ID Q8LFU0
description Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2
trembl
ID A0A067KM65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08742 PE=4 SV=1
Gene Ontology
ID GO:0003700
description nuclear transcription factor y subunit a-10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55831: 29589-29870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007253_040 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
2 Hb_000532_130 0.121147567 - - hypothetical protein [Anabaena sp. PCC 7108]
3 Hb_007259_020 0.1260253199 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
4 Hb_008175_030 0.1350532928 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
5 Hb_060909_010 0.1381664743 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
6 Hb_008226_100 0.1443796794 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
7 Hb_007618_010 0.1515180858 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
8 Hb_001408_150 0.1532526311 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
9 Hb_002739_060 0.1539829095 - - -
10 Hb_001921_010 0.1578954805 - - ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_000450_180 0.1596682144 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_000544_020 0.1655250002 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
13 Hb_000778_020 0.1671744389 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
14 Hb_002475_130 0.1703340681 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
15 Hb_004976_040 0.1705391381 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
16 Hb_010605_010 0.1719106042 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
17 Hb_169620_010 0.1749438309 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
18 Hb_001248_110 0.1752776442 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_001251_070 0.1787404062 - - PREDICTED: probable aldo-keto reductase 2, partial [Populus euphratica]
20 Hb_001608_030 0.178958124 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]

Gene co-expression network

sample Hb_007253_040 Hb_007253_040 Hb_000532_130 Hb_000532_130 Hb_007253_040--Hb_000532_130 Hb_007259_020 Hb_007259_020 Hb_007253_040--Hb_007259_020 Hb_008175_030 Hb_008175_030 Hb_007253_040--Hb_008175_030 Hb_060909_010 Hb_060909_010 Hb_007253_040--Hb_060909_010 Hb_008226_100 Hb_008226_100 Hb_007253_040--Hb_008226_100 Hb_007618_010 Hb_007618_010 Hb_007253_040--Hb_007618_010 Hb_002739_060 Hb_002739_060 Hb_000532_130--Hb_002739_060 Hb_000532_130--Hb_008175_030 Hb_001408_150 Hb_001408_150 Hb_000532_130--Hb_001408_150 Hb_002609_150 Hb_002609_150 Hb_000532_130--Hb_002609_150 Hb_000532_130--Hb_060909_010 Hb_002475_130 Hb_002475_130 Hb_007259_020--Hb_002475_130 Hb_007259_020--Hb_000532_130 Hb_001310_100 Hb_001310_100 Hb_007259_020--Hb_001310_100 Hb_007259_020--Hb_060909_010 Hb_001248_110 Hb_001248_110 Hb_007259_020--Hb_001248_110 Hb_000778_020 Hb_000778_020 Hb_008175_030--Hb_000778_020 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_008175_030--Hb_001408_150 Hb_057079_020 Hb_057079_020 Hb_008175_030--Hb_057079_020 Hb_060909_010--Hb_001408_150 Hb_000544_020 Hb_000544_020 Hb_060909_010--Hb_000544_020 Hb_000233_100 Hb_000233_100 Hb_060909_010--Hb_000233_100 Hb_004648_100 Hb_004648_100 Hb_060909_010--Hb_004648_100 Hb_060909_010--Hb_008226_100 Hb_000216_020 Hb_000216_020 Hb_008226_100--Hb_000216_020 Hb_004976_040 Hb_004976_040 Hb_008226_100--Hb_004976_040 Hb_011310_200 Hb_011310_200 Hb_008226_100--Hb_011310_200 Hb_089100_040 Hb_089100_040 Hb_008226_100--Hb_089100_040 Hb_007618_010--Hb_008175_030 Hb_007618_010--Hb_000532_130 Hb_007618_010--Hb_057079_020 Hb_000088_160 Hb_000088_160 Hb_007618_010--Hb_000088_160 Hb_007618_010--Hb_002739_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.801568 24.3104 4.50482 6.44377 1.53759 5.17677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.090158 0.189149 0 10.8106 4.30925

CAGE analysis