Hb_007254_010

Information

Type -
Description -
Location Contig7254: 13063-13875
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21160g
description POPTRDRAFT_559348; VQ motif-containing family protein
nr
ID KDP43028.1
description hypothetical protein JCGZ_25214 [Jatropha curcas]
swissprot
ID Q8LGD5
description Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2
trembl
ID A0A067L700
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25214 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55832: 13402-13845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007254_010 0.0 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
2 Hb_000692_060 0.0499370007 - - calcium-dependent protein kinase, putative [Ricinus communis]
3 Hb_033834_020 0.054906783 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000188_070 0.0722554622 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_000928_100 0.0818873455 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
6 Hb_022167_010 0.0842452948 - - Kinase, putative isoform 2 [Theobroma cacao]
7 Hb_003777_090 0.0846835945 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
8 Hb_000236_130 0.0857744995 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
9 Hb_000386_010 0.0926106047 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000294_020 0.0946129434 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
11 Hb_001958_030 0.1007792455 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_023904_010 0.1044299745 - - -
13 Hb_005227_030 0.1056664781 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
14 Hb_001544_060 0.1064792489 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
15 Hb_001638_190 0.1109766524 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
16 Hb_000483_470 0.1118725054 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_000890_170 0.1145514016 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
18 Hb_003337_020 0.1145955955 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
19 Hb_000252_240 0.1190741229 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
20 Hb_063405_010 0.1199065273 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_007254_010 Hb_007254_010 Hb_000692_060 Hb_000692_060 Hb_007254_010--Hb_000692_060 Hb_033834_020 Hb_033834_020 Hb_007254_010--Hb_033834_020 Hb_000188_070 Hb_000188_070 Hb_007254_010--Hb_000188_070 Hb_000928_100 Hb_000928_100 Hb_007254_010--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_007254_010--Hb_022167_010 Hb_003777_090 Hb_003777_090 Hb_007254_010--Hb_003777_090 Hb_000692_060--Hb_000188_070 Hb_000692_060--Hb_033834_020 Hb_001958_030 Hb_001958_030 Hb_000692_060--Hb_001958_030 Hb_000236_130 Hb_000236_130 Hb_000692_060--Hb_000236_130 Hb_000692_060--Hb_022167_010 Hb_033834_020--Hb_000188_070 Hb_033834_020--Hb_022167_010 Hb_033834_020--Hb_000928_100 Hb_033834_020--Hb_001958_030 Hb_000188_070--Hb_001958_030 Hb_001638_190 Hb_001638_190 Hb_000188_070--Hb_001638_190 Hb_000188_070--Hb_000928_100 Hb_000928_100--Hb_022167_010 Hb_000386_010 Hb_000386_010 Hb_000928_100--Hb_000386_010 Hb_000749_140 Hb_000749_140 Hb_000928_100--Hb_000749_140 Hb_000294_020 Hb_000294_020 Hb_000928_100--Hb_000294_020 Hb_001916_110 Hb_001916_110 Hb_000928_100--Hb_001916_110 Hb_022167_010--Hb_000236_130 Hb_179129_010 Hb_179129_010 Hb_022167_010--Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_022167_010--Hb_004346_050 Hb_003777_090--Hb_000294_020 Hb_003777_090--Hb_000236_130 Hb_063405_010 Hb_063405_010 Hb_003777_090--Hb_063405_010 Hb_000483_470 Hb_000483_470 Hb_003777_090--Hb_000483_470 Hb_003937_010 Hb_003937_010 Hb_003777_090--Hb_003937_010 Hb_003777_090--Hb_022167_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.14578 12.2902 1.92874 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.462307 6.16196

CAGE analysis