Hb_007254_030

Information

Type -
Description -
Location Contig7254: 24734-27398
Sequence    

Annotation

kegg
ID rcu:RCOM_0137010
description kinase, putative (EC:2.7.11.30)
nr
ID XP_002526129.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9FHX3
description L-type lectin-domain containing receptor kinase S.6 OS=Arabidopsis thaliana GN=LECRKS6 PE=2 SV=1
trembl
ID B9SJG0
description Kinase, putative OS=Ricinus communis GN=RCOM_0137010 PE=3 SV=1
Gene Ontology
ID GO:0005886
description l-type lectin-domain containing receptor kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55836: 28094-29610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007254_030 0.0 - - kinase, putative [Ricinus communis]
2 Hb_000416_030 0.2596658545 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
3 Hb_001098_030 0.2611553742 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
4 Hb_000523_110 0.2652058273 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
5 Hb_004648_110 0.2687373814 - - ATP binding protein, putative [Ricinus communis]
6 Hb_003687_220 0.2691675813 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
7 Hb_012098_090 0.2854749374 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
8 Hb_177019_010 0.2921619267 - - Uncharacterized protein TCM_004012 [Theobroma cacao]
9 Hb_000442_110 0.2924902976 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
10 Hb_002768_090 0.3076411215 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
11 Hb_012239_010 0.3085017254 - - -
12 Hb_026687_030 0.3088717031 - - hypothetical protein AMTR_s00038p00220080 [Amborella trichopoda]
13 Hb_092891_010 0.3098493725 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
14 Hb_006836_030 0.3098762974 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
15 Hb_002338_030 0.310953733 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
16 Hb_012239_050 0.312288341 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000622_080 0.3171944815 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
18 Hb_000099_140 0.3180407649 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
19 Hb_003181_060 0.3205348668 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
20 Hb_001439_090 0.3227115396 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007254_030 Hb_007254_030 Hb_000416_030 Hb_000416_030 Hb_007254_030--Hb_000416_030 Hb_001098_030 Hb_001098_030 Hb_007254_030--Hb_001098_030 Hb_000523_110 Hb_000523_110 Hb_007254_030--Hb_000523_110 Hb_004648_110 Hb_004648_110 Hb_007254_030--Hb_004648_110 Hb_003687_220 Hb_003687_220 Hb_007254_030--Hb_003687_220 Hb_012098_090 Hb_012098_090 Hb_007254_030--Hb_012098_090 Hb_012490_020 Hb_012490_020 Hb_000416_030--Hb_012490_020 Hb_000416_030--Hb_000523_110 Hb_000416_030--Hb_003687_220 Hb_000622_080 Hb_000622_080 Hb_000416_030--Hb_000622_080 Hb_000191_080 Hb_000191_080 Hb_000416_030--Hb_000191_080 Hb_001098_030--Hb_004648_110 Hb_006836_030 Hb_006836_030 Hb_001098_030--Hb_006836_030 Hb_001975_040 Hb_001975_040 Hb_001098_030--Hb_001975_040 Hb_003181_060 Hb_003181_060 Hb_001098_030--Hb_003181_060 Hb_002603_110 Hb_002603_110 Hb_001098_030--Hb_002603_110 Hb_012239_050 Hb_012239_050 Hb_001098_030--Hb_012239_050 Hb_001450_030 Hb_001450_030 Hb_000523_110--Hb_001450_030 Hb_000152_210 Hb_000152_210 Hb_000523_110--Hb_000152_210 Hb_012022_140 Hb_012022_140 Hb_000523_110--Hb_012022_140 Hb_001269_470 Hb_001269_470 Hb_000523_110--Hb_001269_470 Hb_000005_300 Hb_000005_300 Hb_000523_110--Hb_000005_300 Hb_015807_160 Hb_015807_160 Hb_000523_110--Hb_015807_160 Hb_004648_110--Hb_012239_050 Hb_003911_030 Hb_003911_030 Hb_004648_110--Hb_003911_030 Hb_000271_080 Hb_000271_080 Hb_004648_110--Hb_000271_080 Hb_004648_110--Hb_002603_110 Hb_170426_010 Hb_170426_010 Hb_003687_220--Hb_170426_010 Hb_005144_190 Hb_005144_190 Hb_003687_220--Hb_005144_190 Hb_008759_020 Hb_008759_020 Hb_003687_220--Hb_008759_020 Hb_002338_030 Hb_002338_030 Hb_003687_220--Hb_002338_030 Hb_001449_100 Hb_001449_100 Hb_003687_220--Hb_001449_100 Hb_004679_060 Hb_004679_060 Hb_003687_220--Hb_004679_060 Hb_001411_040 Hb_001411_040 Hb_012098_090--Hb_001411_040 Hb_000099_140 Hb_000099_140 Hb_012098_090--Hb_000099_140 Hb_000116_070 Hb_000116_070 Hb_012098_090--Hb_000116_070 Hb_012098_090--Hb_000416_030 Hb_000608_430 Hb_000608_430 Hb_012098_090--Hb_000608_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0145028 0.0264602 0.0683729 0.198407 0 0.027383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.416081 0 0.103874 0.162866

CAGE analysis