Hb_007254_080

Information

Type -
Description -
Location Contig7254: 70863-76495
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007254_080 0.0 - - -
2 Hb_000110_170 0.1041879299 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_004545_130 0.12245108 - - uncharacterized protein LOC100305465 [Glycine max]
4 Hb_002243_060 0.1240551685 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
5 Hb_004567_020 0.1334135472 - - Small ubiquitin-related modifier 2 [Morus notabilis]
6 Hb_005000_180 0.1439038594 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
7 Hb_147752_010 0.1451252384 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
8 Hb_003181_050 0.1510664512 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
9 Hb_000302_290 0.1526502157 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
10 Hb_000878_020 0.1540173883 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
11 Hb_003540_200 0.1541275461 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
12 Hb_009778_040 0.155229964 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
13 Hb_004735_050 0.1556974709 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
14 Hb_006588_080 0.1576531103 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
15 Hb_001386_050 0.1580377163 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
16 Hb_116420_020 0.1581127452 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
17 Hb_001766_030 0.1582237074 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
18 Hb_002105_030 0.1586063006 - - -
19 Hb_062135_020 0.1591098114 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
20 Hb_025645_030 0.1599964169 - - -

Gene co-expression network

sample Hb_007254_080 Hb_007254_080 Hb_000110_170 Hb_000110_170 Hb_007254_080--Hb_000110_170 Hb_004545_130 Hb_004545_130 Hb_007254_080--Hb_004545_130 Hb_002243_060 Hb_002243_060 Hb_007254_080--Hb_002243_060 Hb_004567_020 Hb_004567_020 Hb_007254_080--Hb_004567_020 Hb_005000_180 Hb_005000_180 Hb_007254_080--Hb_005000_180 Hb_147752_010 Hb_147752_010 Hb_007254_080--Hb_147752_010 Hb_000878_020 Hb_000878_020 Hb_000110_170--Hb_000878_020 Hb_006588_080 Hb_006588_080 Hb_000110_170--Hb_006588_080 Hb_003540_200 Hb_003540_200 Hb_000110_170--Hb_003540_200 Hb_003020_330 Hb_003020_330 Hb_000110_170--Hb_003020_330 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_001225_010 Hb_001225_010 Hb_000110_170--Hb_001225_010 Hb_000635_080 Hb_000635_080 Hb_004545_130--Hb_000635_080 Hb_001377_380 Hb_001377_380 Hb_004545_130--Hb_001377_380 Hb_000617_110 Hb_000617_110 Hb_004545_130--Hb_000617_110 Hb_000431_160 Hb_000431_160 Hb_004545_130--Hb_000431_160 Hb_004735_050 Hb_004735_050 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030 Hb_002243_060--Hb_000110_170 Hb_002081_030 Hb_002081_030 Hb_002243_060--Hb_002081_030 Hb_002042_080 Hb_002042_080 Hb_002243_060--Hb_002042_080 Hb_000178_120 Hb_000178_120 Hb_002243_060--Hb_000178_120 Hb_002243_060--Hb_147752_010 Hb_004567_020--Hb_120823_010 Hb_004567_020--Hb_004545_130 Hb_004567_020--Hb_000878_020 Hb_004567_020--Hb_000110_170 Hb_004567_020--Hb_147752_010 Hb_062135_020 Hb_062135_020 Hb_005000_180--Hb_062135_020 Hb_000163_210 Hb_000163_210 Hb_005000_180--Hb_000163_210 Hb_000302_290 Hb_000302_290 Hb_005000_180--Hb_000302_290 Hb_005000_180--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_005000_180--Hb_000300_390 Hb_000239_030 Hb_000239_030 Hb_005000_180--Hb_000239_030 Hb_001240_020 Hb_001240_020 Hb_147752_010--Hb_001240_020 Hb_000111_100 Hb_000111_100 Hb_147752_010--Hb_000111_100 Hb_000928_130 Hb_000928_130 Hb_147752_010--Hb_000928_130 Hb_147752_010--Hb_000110_170 Hb_007441_260 Hb_007441_260 Hb_147752_010--Hb_007441_260 Hb_000445_490 Hb_000445_490 Hb_147752_010--Hb_000445_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.70366 1.52717 2.46654 4.85771 0.0705364 0.937885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1842 36.0223 13.1139 5.37883 3.1404

CAGE analysis