Hb_007257_010

Information

Type -
Description -
Location Contig7257: 18100-18570
Sequence    

Annotation

kegg
ID pxb:103927502
description 17.1 kDa class II heat shock protein-like
nr
ID AAD41409.1
description cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
swissprot
ID P05477
description 17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1
trembl
ID Q9XGS6
description Cytosolic class II low molecular weight heat shock protein OS=Prunus dulcis GN=hsp17.5 PE=2 SV=1
Gene Ontology
ID GO:0005737
description kda class ii heat shock

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55842: 17986-18662
cDNA
(Sanger)
(ID:Location)		 015_J16.ab1: 17986-18657 , 034_D01.ab1: 17986-18657 , 047_B15.ab1: 17986-18657

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007257_010 0.0 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
2 Hb_010407_190 0.1451980212 - - phosphate transporter [Manihot esculenta]
3 Hb_006573_010 0.153478773 - - heat shock protein [Hevea brasiliensis]
4 Hb_027380_230 0.1563633791 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
5 Hb_020247_050 0.1620214388 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
6 Hb_008147_050 0.1823532092 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
7 Hb_001766_040 0.1921719787 - - chaperone clpb, putative [Ricinus communis]
8 Hb_119886_040 0.1951286942 - - -
9 Hb_011164_010 0.1951434273 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
10 Hb_000062_110 0.1974086813 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
11 Hb_000197_290 0.2037746291 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
12 Hb_000206_120 0.2061443776 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
13 Hb_000483_180 0.2072014721 - - -
14 Hb_004884_030 0.2085378655 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
15 Hb_001999_280 0.2109681358 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_020094_020 0.2139406263 - - PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
17 Hb_012753_040 0.2142045214 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
18 Hb_097646_010 0.2147715413 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
19 Hb_003604_030 0.2149583483 - - hypothetical protein MIMGU_mgv1a025764mg, partial [Erythranthe guttata]
20 Hb_005736_050 0.2152377102 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]

Gene co-expression network

sample Hb_007257_010 Hb_007257_010 Hb_010407_190 Hb_010407_190 Hb_007257_010--Hb_010407_190 Hb_006573_010 Hb_006573_010 Hb_007257_010--Hb_006573_010 Hb_027380_230 Hb_027380_230 Hb_007257_010--Hb_027380_230 Hb_020247_050 Hb_020247_050 Hb_007257_010--Hb_020247_050 Hb_008147_050 Hb_008147_050 Hb_007257_010--Hb_008147_050 Hb_001766_040 Hb_001766_040 Hb_007257_010--Hb_001766_040 Hb_000062_110 Hb_000062_110 Hb_010407_190--Hb_000062_110 Hb_010407_190--Hb_001766_040 Hb_000329_100 Hb_000329_100 Hb_010407_190--Hb_000329_100 Hb_000031_170 Hb_000031_170 Hb_010407_190--Hb_000031_170 Hb_000011_210 Hb_000011_210 Hb_010407_190--Hb_000011_210 Hb_012753_040 Hb_012753_040 Hb_006573_010--Hb_012753_040 Hb_006573_010--Hb_001766_040 Hb_000302_300 Hb_000302_300 Hb_006573_010--Hb_000302_300 Hb_006573_010--Hb_020247_050 Hb_000991_050 Hb_000991_050 Hb_006573_010--Hb_000991_050 Hb_004884_030 Hb_004884_030 Hb_027380_230--Hb_004884_030 Hb_027380_230--Hb_008147_050 Hb_000206_120 Hb_000206_120 Hb_027380_230--Hb_000206_120 Hb_000376_060 Hb_000376_060 Hb_027380_230--Hb_000376_060 Hb_003376_260 Hb_003376_260 Hb_027380_230--Hb_003376_260 Hb_020247_050--Hb_000302_300 Hb_002843_220 Hb_002843_220 Hb_020247_050--Hb_002843_220 Hb_000796_050 Hb_000796_050 Hb_020247_050--Hb_000796_050 Hb_020247_050--Hb_012753_040 Hb_011164_010 Hb_011164_010 Hb_008147_050--Hb_011164_010 Hb_000062_030 Hb_000062_030 Hb_008147_050--Hb_000062_030 Hb_000505_110 Hb_000505_110 Hb_008147_050--Hb_000505_110 Hb_008147_050--Hb_000206_120 Hb_008147_050--Hb_004884_030 Hb_001766_040--Hb_000062_110 Hb_001366_160 Hb_001366_160 Hb_001766_040--Hb_001366_160 Hb_005962_010 Hb_005962_010 Hb_001766_040--Hb_005962_010 Hb_002368_070 Hb_002368_070 Hb_001766_040--Hb_002368_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
383.831 1346.38 252.197 386.257 1386.91 1029.26
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.3109 57.2081 199.517 78.7034 1166.22

CAGE analysis