Hb_007257_050

Information

Type -
Description -
Location Contig7257: 33325-34392
Sequence    

Annotation

kegg
ID rcu:RCOM_0706530
description protein with unknown function
nr
ID XP_002516110.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q5RD67
description Solute carrier family 25 member 44 OS=Pongo abelii GN=SLC25A44 PE=2 SV=2
trembl
ID B9RQU1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0706530 PE=3 SV=1
Gene Ontology
ID GO:0016021
description solute carrier family 25 member 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55843: 32785-33226 , PASA_asmbl_55844: 33578-33997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007257_050 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_031089_030 0.0959659199 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
3 Hb_010584_010 0.1016218403 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
4 Hb_009028_030 0.1119554153 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
5 Hb_000265_250 0.1161891858 - - auxilin, putative [Ricinus communis]
6 Hb_003349_010 0.1167624286 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
7 Hb_003157_010 0.1170397509 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
8 Hb_000808_070 0.117981435 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
9 Hb_084429_010 0.1258827559 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
10 Hb_002609_010 0.1267522431 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
11 Hb_000003_390 0.1287634549 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
12 Hb_002849_080 0.1295464206 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
13 Hb_006501_020 0.1312023446 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
14 Hb_002316_050 0.1315767266 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011465_030 0.1339027605 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_001396_260 0.1344216935 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
17 Hb_057451_010 0.1367781355 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
18 Hb_010831_020 0.1407011749 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_001301_230 0.1423885387 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
20 Hb_148209_020 0.1448534062 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007257_050 Hb_007257_050 Hb_031089_030 Hb_031089_030 Hb_007257_050--Hb_031089_030 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_009028_030 Hb_009028_030 Hb_007257_050--Hb_009028_030 Hb_000265_250 Hb_000265_250 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_003157_010 Hb_003157_010 Hb_007257_050--Hb_003157_010 Hb_003299_080 Hb_003299_080 Hb_031089_030--Hb_003299_080 Hb_084429_010 Hb_084429_010 Hb_031089_030--Hb_084429_010 Hb_001396_260 Hb_001396_260 Hb_031089_030--Hb_001396_260 Hb_000375_370 Hb_000375_370 Hb_031089_030--Hb_000375_370 Hb_001247_140 Hb_001247_140 Hb_031089_030--Hb_001247_140 Hb_057451_010 Hb_057451_010 Hb_010584_010--Hb_057451_010 Hb_010584_010--Hb_009028_030 Hb_003710_040 Hb_003710_040 Hb_010584_010--Hb_003710_040 Hb_002609_010 Hb_002609_010 Hb_010584_010--Hb_002609_010 Hb_000640_200 Hb_000640_200 Hb_010584_010--Hb_000640_200 Hb_009028_030--Hb_057451_010 Hb_009028_030--Hb_003710_040 Hb_009028_030--Hb_000265_250 Hb_009028_030--Hb_003157_010 Hb_004899_070 Hb_004899_070 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_000265_250--Hb_011465_030 Hb_002477_150 Hb_002477_150 Hb_000265_250--Hb_002477_150 Hb_148209_020 Hb_148209_020 Hb_000265_250--Hb_148209_020 Hb_001247_230 Hb_001247_230 Hb_000265_250--Hb_001247_230 Hb_002849_080 Hb_002849_080 Hb_000265_250--Hb_002849_080 Hb_003349_010--Hb_002849_080 Hb_001999_250 Hb_001999_250 Hb_003349_010--Hb_001999_250 Hb_003349_010--Hb_009028_030 Hb_003349_010--Hb_010584_010 Hb_003349_010--Hb_001247_230 Hb_003157_010--Hb_057451_010 Hb_006501_020 Hb_006501_020 Hb_003157_010--Hb_006501_020 Hb_000808_070 Hb_000808_070 Hb_003157_010--Hb_000808_070 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6184 18.9892 0.964748 3.38034 10.7583 14.2348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.38269 1.65361 1.83379 4.21997 1.5103

CAGE analysis