Hb_007259_010

Information

Type -
Description -
Location Contig7259: 41809-52061
Sequence    

Annotation

kegg
ID cic:CICLE_v10011118mg
description hypothetical protein
nr
ID KDO64309.1
description hypothetical protein CISIN_1g0073972mg, partial [Citrus sinensis]
swissprot
ID P07761
description S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2
trembl
ID F6H2A6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g04250 PE=4 SV=1
Gene Ontology
ID GO:0000166
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55850: 45350-46398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007259_010 0.0 - - hypothetical protein CISIN_1g0073972mg, partial [Citrus sinensis]
2 Hb_010690_010 0.0817734826 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
3 Hb_001882_080 0.086231561 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103324347 [Prunus mume]
4 Hb_011574_020 0.1220871679 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
5 Hb_004531_130 0.1231911675 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
6 Hb_001638_340 0.1298259737 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000742_290 0.1364449399 - - Reticuline oxidase precursor, putative [Ricinus communis]
8 Hb_020738_010 0.1387469236 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
9 Hb_000139_520 0.1393991585 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
10 Hb_059275_010 0.1397307491 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
11 Hb_001715_060 0.1526953465 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
12 Hb_000527_050 0.1528398855 - - conserved hypothetical protein [Ricinus communis]
13 Hb_084812_010 0.1533442395 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
14 Hb_005111_020 0.1546837714 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
15 Hb_004112_070 0.1578241356 - - -
16 Hb_001110_060 0.1585306838 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
17 Hb_001427_100 0.1586365225 - - acc synthase, putative [Ricinus communis]
18 Hb_000000_320 0.1592598093 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
19 Hb_000861_060 0.1614538957 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
20 Hb_009070_010 0.1618101649 - - Spermidine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007259_010 Hb_007259_010 Hb_010690_010 Hb_010690_010 Hb_007259_010--Hb_010690_010 Hb_001882_080 Hb_001882_080 Hb_007259_010--Hb_001882_080 Hb_011574_020 Hb_011574_020 Hb_007259_010--Hb_011574_020 Hb_004531_130 Hb_004531_130 Hb_007259_010--Hb_004531_130 Hb_001638_340 Hb_001638_340 Hb_007259_010--Hb_001638_340 Hb_000742_290 Hb_000742_290 Hb_007259_010--Hb_000742_290 Hb_010690_010--Hb_004531_130 Hb_010690_010--Hb_001882_080 Hb_020738_010 Hb_020738_010 Hb_010690_010--Hb_020738_010 Hb_010690_010--Hb_000742_290 Hb_010690_010--Hb_011574_020 Hb_001882_080--Hb_000742_290 Hb_001882_080--Hb_004531_130 Hb_001882_080--Hb_011574_020 Hb_000139_520 Hb_000139_520 Hb_001882_080--Hb_000139_520 Hb_011574_020--Hb_020738_010 Hb_011574_020--Hb_001638_340 Hb_059275_010 Hb_059275_010 Hb_011574_020--Hb_059275_010 Hb_000012_350 Hb_000012_350 Hb_011574_020--Hb_000012_350 Hb_008895_020 Hb_008895_020 Hb_011574_020--Hb_008895_020 Hb_001794_040 Hb_001794_040 Hb_011574_020--Hb_001794_040 Hb_004531_130--Hb_000742_290 Hb_050898_030 Hb_050898_030 Hb_004531_130--Hb_050898_030 Hb_009070_010 Hb_009070_010 Hb_004531_130--Hb_009070_010 Hb_000861_060 Hb_000861_060 Hb_004531_130--Hb_000861_060 Hb_004531_130--Hb_020738_010 Hb_001638_340--Hb_008895_020 Hb_124677_090 Hb_124677_090 Hb_001638_340--Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_001638_340--Hb_001477_060 Hb_001638_340--Hb_000012_350 Hb_001638_340--Hb_059275_010 Hb_001059_110 Hb_001059_110 Hb_000742_290--Hb_001059_110 Hb_000085_410 Hb_000085_410 Hb_000742_290--Hb_000085_410 Hb_000922_050 Hb_000922_050 Hb_000742_290--Hb_000922_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.136483 0.300676 0.535717 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0346336 0.00357449 0.135243

CAGE analysis