Hb_007263_010

Information

Type -
Description -
Location Contig7263: 39-2084
Sequence    

Annotation

kegg
ID rcu:RCOM_0901430
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012073132.1
description PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06108 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007263_010 0.0 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
2 Hb_007451_040 0.0688658699 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
3 Hb_004994_080 0.0713094509 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002027_320 0.0744938604 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
5 Hb_000392_450 0.0801205096 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
6 Hb_006555_040 0.084297904 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
7 Hb_011386_050 0.0974680418 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
8 Hb_000181_060 0.0980383818 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
9 Hb_000905_120 0.1026158865 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
10 Hb_000140_440 0.1038558046 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
11 Hb_009771_060 0.1079666546 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
12 Hb_007217_010 0.1095779109 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
13 Hb_001930_030 0.1138667506 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
14 Hb_003874_010 0.1142881598 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
15 Hb_000284_130 0.1164655832 - - sodium-bile acid cotransporter, putative [Ricinus communis]
16 Hb_000211_040 0.121577428 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
17 Hb_015292_040 0.1237143775 - - PREDICTED: myb-like protein X [Jatropha curcas]
18 Hb_001541_110 0.1237183791 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_005162_110 0.1255032841 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
20 Hb_030545_010 0.1265738207 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]

Gene co-expression network

sample Hb_007263_010 Hb_007263_010 Hb_007451_040 Hb_007451_040 Hb_007263_010--Hb_007451_040 Hb_004994_080 Hb_004994_080 Hb_007263_010--Hb_004994_080 Hb_002027_320 Hb_002027_320 Hb_007263_010--Hb_002027_320 Hb_000392_450 Hb_000392_450 Hb_007263_010--Hb_000392_450 Hb_006555_040 Hb_006555_040 Hb_007263_010--Hb_006555_040 Hb_011386_050 Hb_011386_050 Hb_007263_010--Hb_011386_050 Hb_001541_110 Hb_001541_110 Hb_007451_040--Hb_001541_110 Hb_007451_040--Hb_004994_080 Hb_000140_440 Hb_000140_440 Hb_007451_040--Hb_000140_440 Hb_007451_040--Hb_006555_040 Hb_005162_110 Hb_005162_110 Hb_007451_040--Hb_005162_110 Hb_000364_100 Hb_000364_100 Hb_004994_080--Hb_000364_100 Hb_000181_060 Hb_000181_060 Hb_004994_080--Hb_000181_060 Hb_004994_080--Hb_011386_050 Hb_004994_080--Hb_005162_110 Hb_004994_080--Hb_006555_040 Hb_002027_320--Hb_000392_450 Hb_002027_320--Hb_004994_080 Hb_002027_320--Hb_011386_050 Hb_011381_040 Hb_011381_040 Hb_002027_320--Hb_011381_040 Hb_002027_320--Hb_000181_060 Hb_004517_030 Hb_004517_030 Hb_000392_450--Hb_004517_030 Hb_003874_010 Hb_003874_010 Hb_000392_450--Hb_003874_010 Hb_007217_010 Hb_007217_010 Hb_000392_450--Hb_007217_010 Hb_000212_250 Hb_000212_250 Hb_000392_450--Hb_000212_250 Hb_006555_040--Hb_000140_440 Hb_001930_030 Hb_001930_030 Hb_006555_040--Hb_001930_030 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_006555_040--Hb_011386_050 Hb_000340_130 Hb_000340_130 Hb_011386_050--Hb_000340_130 Hb_011386_050--Hb_000364_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.939 12.1693 84.2723 19.7741 15.8303 11.7343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1331 19.4352 6.9964 9.3389 31.2061

CAGE analysis