Hb_007281_010

Information

Type -
Description -
Location Contig7281: 13688-14659
Sequence    

Annotation

kegg
ID rcu:RCOM_0411600
description transferase, transferring glycosyl groups, putative
nr
ID XP_002533272.1
description transferase, transferring glycosyl groups, putative [Ricinus communis]
swissprot
ID Q9LN68
description Probable galacturonosyltransferase-like 1 OS=Arabidopsis thaliana GN=GATL1 PE=2 SV=1
trembl
ID B9T4V3
description Hexosyltransferase OS=Ricinus communis GN=RCOM_0411600 PE=3 SV=1
Gene Ontology
ID GO:0016757
description probable galacturonosyltransferase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55877: 14066-14436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007281_010 0.0 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
2 Hb_002311_010 0.0472290032 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
3 Hb_038927_020 0.0495033963 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
4 Hb_001014_180 0.0528000176 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
5 Hb_000462_040 0.0531798299 - - ATSMC2, putative [Ricinus communis]
6 Hb_034507_030 0.0647378947 - - PREDICTED: laccase-4-like [Jatropha curcas]
7 Hb_001712_030 0.0660900293 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
8 Hb_004920_150 0.0690981367 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002739_140 0.0693110575 - - PREDICTED: protein TPX2 [Jatropha curcas]
10 Hb_008705_080 0.0703786903 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
11 Hb_004117_230 0.0704033079 - - lipid transfer precursor protein [Hevea brasiliensis]
12 Hb_003972_070 0.0719109064 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
13 Hb_000805_060 0.0775923898 - - laccase, putative [Ricinus communis]
14 Hb_006483_020 0.0782689422 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
15 Hb_000416_020 0.0786086207 - - conserved hypothetical protein [Ricinus communis]
16 Hb_026198_080 0.0807077918 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
17 Hb_001935_060 0.0811473921 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
18 Hb_000311_100 0.0823528956 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010166_010 0.0862232169 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
20 Hb_158092_090 0.0866813061 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007281_010 Hb_007281_010 Hb_002311_010 Hb_002311_010 Hb_007281_010--Hb_002311_010 Hb_038927_020 Hb_038927_020 Hb_007281_010--Hb_038927_020 Hb_001014_180 Hb_001014_180 Hb_007281_010--Hb_001014_180 Hb_000462_040 Hb_000462_040 Hb_007281_010--Hb_000462_040 Hb_034507_030 Hb_034507_030 Hb_007281_010--Hb_034507_030 Hb_001712_030 Hb_001712_030 Hb_007281_010--Hb_001712_030 Hb_002311_010--Hb_038927_020 Hb_001935_060 Hb_001935_060 Hb_002311_010--Hb_001935_060 Hb_001377_220 Hb_001377_220 Hb_002311_010--Hb_001377_220 Hb_000416_020 Hb_000416_020 Hb_002311_010--Hb_000416_020 Hb_010166_010 Hb_010166_010 Hb_002311_010--Hb_010166_010 Hb_038927_020--Hb_000416_020 Hb_038927_020--Hb_001935_060 Hb_038927_020--Hb_001377_220 Hb_002739_140 Hb_002739_140 Hb_038927_020--Hb_002739_140 Hb_001014_180--Hb_034507_030 Hb_003972_070 Hb_003972_070 Hb_001014_180--Hb_003972_070 Hb_004117_230 Hb_004117_230 Hb_001014_180--Hb_004117_230 Hb_001014_180--Hb_000462_040 Hb_001014_180--Hb_002311_010 Hb_000462_040--Hb_001712_030 Hb_001123_300 Hb_001123_300 Hb_000462_040--Hb_001123_300 Hb_000462_040--Hb_034507_030 Hb_006483_020 Hb_006483_020 Hb_000462_040--Hb_006483_020 Hb_008705_080 Hb_008705_080 Hb_000462_040--Hb_008705_080 Hb_004994_230 Hb_004994_230 Hb_034507_030--Hb_004994_230 Hb_034507_030--Hb_006483_020 Hb_000090_010 Hb_000090_010 Hb_034507_030--Hb_000090_010 Hb_001712_030--Hb_038927_020 Hb_001712_030--Hb_002311_010 Hb_000311_100 Hb_000311_100 Hb_001712_030--Hb_000311_100 Hb_000165_260 Hb_000165_260 Hb_001712_030--Hb_000165_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.968935 1.14484 20.0191 0.0904496 0.0255616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.166186 20.992

CAGE analysis