Hb_007283_010

Information

Type -
Description -
Location Contig7283: 7654-21666
Sequence    

Annotation

kegg
ID rcu:RCOM_1137830
description Pre-mRNA-processing protein PRP40, putative
nr
ID XP_012089634.1
description PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
swissprot
ID Q9LT25
description Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C PE=1 SV=1
trembl
ID A0A067JGI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01659 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55879: 13342-13613 , PASA_asmbl_55880: 8401-20061 , PASA_asmbl_55881: 20751-37553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007283_010 0.0 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
2 Hb_005288_070 0.0499435437 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_000457_230 0.0618007076 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
4 Hb_030414_040 0.0663617338 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
5 Hb_004324_330 0.0695053365 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
6 Hb_031284_010 0.0708428477 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
7 Hb_000205_260 0.070994072 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
8 Hb_007044_110 0.071963058 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_004619_060 0.0737537258 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
10 Hb_003225_020 0.0739752289 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
11 Hb_000175_410 0.0743789211 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
12 Hb_005523_020 0.0746528195 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
13 Hb_004994_120 0.0756425198 - - PREDICTED: acyl-coenzyme A thioesterase 13-like isoform X1 [Jatropha curcas]
14 Hb_000120_210 0.0762292306 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
15 Hb_000111_170 0.0772577972 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
16 Hb_001158_160 0.0791689107 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
17 Hb_003747_120 0.0791740165 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
18 Hb_000085_210 0.0811353102 - - DNA topoisomerase type I, putative [Ricinus communis]
19 Hb_000878_160 0.0819313002 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
20 Hb_000245_150 0.0823058821 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_007283_010 Hb_007283_010 Hb_005288_070 Hb_005288_070 Hb_007283_010--Hb_005288_070 Hb_000457_230 Hb_000457_230 Hb_007283_010--Hb_000457_230 Hb_030414_040 Hb_030414_040 Hb_007283_010--Hb_030414_040 Hb_004324_330 Hb_004324_330 Hb_007283_010--Hb_004324_330 Hb_031284_010 Hb_031284_010 Hb_007283_010--Hb_031284_010 Hb_000205_260 Hb_000205_260 Hb_007283_010--Hb_000205_260 Hb_005288_070--Hb_030414_040 Hb_007044_110 Hb_007044_110 Hb_005288_070--Hb_007044_110 Hb_005288_070--Hb_000205_260 Hb_005288_070--Hb_000457_230 Hb_000111_170 Hb_000111_170 Hb_005288_070--Hb_000111_170 Hb_000457_230--Hb_007044_110 Hb_000457_230--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_001158_160 Hb_001158_160 Hb_030414_040--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_030414_040--Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_030414_040--Hb_004096_240 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_030414_040--Hb_000111_170 Hb_000175_410 Hb_000175_410 Hb_004324_330--Hb_000175_410 Hb_002233_130 Hb_002233_130 Hb_004324_330--Hb_002233_130 Hb_007305_020 Hb_007305_020 Hb_004324_330--Hb_007305_020 Hb_001244_150 Hb_001244_150 Hb_004324_330--Hb_001244_150 Hb_004324_330--Hb_000205_260 Hb_008059_010 Hb_008059_010 Hb_031284_010--Hb_008059_010 Hb_000115_280 Hb_000115_280 Hb_031284_010--Hb_000115_280 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_031284_010--Hb_000120_210 Hb_031284_010--Hb_000457_230 Hb_000205_260--Hb_005523_020 Hb_000205_260--Hb_007044_110 Hb_000205_260--Hb_007305_020 Hb_000205_260--Hb_008059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.90474 13.524 19.3916 8.9032 10.4591 9.60659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6755 8.29032 4.04075 8.83591 16.9041

CAGE analysis