Hb_007290_080

Information

Type -
Description -
Location Contig7290: 85436-88495
Sequence    

Annotation

kegg
ID sot:102595543
description protein BUD31 homolog 1-like
nr
ID KDO38258.1
description hypothetical protein CISIN_1g047098mg [Citrus sinensis]
swissprot
ID Q65WT0
description Protein BUD31 homolog 2 OS=Oryza sativa subsp. japonica GN=Os05g0446300 PE=2 SV=1
trembl
ID A0A067D640
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047098mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description g10 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55897: 87010-87399 , PASA_asmbl_55898: 85756-87916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007290_080 0.0 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]
2 Hb_001571_090 0.1149957627 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
3 Hb_010815_030 0.1187968427 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
4 Hb_000329_020 0.1351049162 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
5 Hb_009384_020 0.1376396216 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
6 Hb_148909_020 0.1392548654 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_009711_020 0.1454670992 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
8 Hb_000451_060 0.1456414521 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
9 Hb_002609_210 0.1466034151 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
10 Hb_002713_080 0.1466192662 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
11 Hb_000676_160 0.1470266636 - - folate carrier protein, putative [Ricinus communis]
12 Hb_008695_040 0.1481040639 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
13 Hb_000483_250 0.1482095554 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
14 Hb_004129_040 0.1489084277 - - PREDICTED: protein VACUOLELESS1 [Vitis vinifera]
15 Hb_002311_320 0.149664948 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
16 Hb_009421_040 0.1503470242 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
17 Hb_000191_030 0.1521124714 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
18 Hb_026398_010 0.152590579 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
19 Hb_000661_240 0.1536971979 - - hypothetical protein POPTR_0009s05540g [Populus trichocarpa]
20 Hb_002226_040 0.1538054716 - - PREDICTED: uncharacterized protein LOC105641318 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007290_080 Hb_007290_080 Hb_001571_090 Hb_001571_090 Hb_007290_080--Hb_001571_090 Hb_010815_030 Hb_010815_030 Hb_007290_080--Hb_010815_030 Hb_000329_020 Hb_000329_020 Hb_007290_080--Hb_000329_020 Hb_009384_020 Hb_009384_020 Hb_007290_080--Hb_009384_020 Hb_148909_020 Hb_148909_020 Hb_007290_080--Hb_148909_020 Hb_009711_020 Hb_009711_020 Hb_007290_080--Hb_009711_020 Hb_003226_220 Hb_003226_220 Hb_001571_090--Hb_003226_220 Hb_000661_240 Hb_000661_240 Hb_001571_090--Hb_000661_240 Hb_009554_010 Hb_009554_010 Hb_001571_090--Hb_009554_010 Hb_026398_010 Hb_026398_010 Hb_001571_090--Hb_026398_010 Hb_001769_100 Hb_001769_100 Hb_001571_090--Hb_001769_100 Hb_004871_020 Hb_004871_020 Hb_010815_030--Hb_004871_020 Hb_007441_300 Hb_007441_300 Hb_010815_030--Hb_007441_300 Hb_002226_040 Hb_002226_040 Hb_010815_030--Hb_002226_040 Hb_010815_030--Hb_009711_020 Hb_153544_010 Hb_153544_010 Hb_010815_030--Hb_153544_010 Hb_000030_290 Hb_000030_290 Hb_010815_030--Hb_000030_290 Hb_172221_010 Hb_172221_010 Hb_000329_020--Hb_172221_010 Hb_000042_260 Hb_000042_260 Hb_000329_020--Hb_000042_260 Hb_000329_020--Hb_026398_010 Hb_002909_130 Hb_002909_130 Hb_000329_020--Hb_002909_130 Hb_000331_640 Hb_000331_640 Hb_000329_020--Hb_000331_640 Hb_019516_100 Hb_019516_100 Hb_000329_020--Hb_019516_100 Hb_009384_020--Hb_019516_100 Hb_000159_070 Hb_000159_070 Hb_009384_020--Hb_000159_070 Hb_007944_040 Hb_007944_040 Hb_009384_020--Hb_007944_040 Hb_001158_230 Hb_001158_230 Hb_009384_020--Hb_001158_230 Hb_012753_230 Hb_012753_230 Hb_009384_020--Hb_012753_230 Hb_009384_020--Hb_000042_260 Hb_000483_250 Hb_000483_250 Hb_148909_020--Hb_000483_250 Hb_148909_020--Hb_000159_070 Hb_008887_040 Hb_008887_040 Hb_148909_020--Hb_008887_040 Hb_060618_010 Hb_060618_010 Hb_148909_020--Hb_060618_010 Hb_000172_420 Hb_000172_420 Hb_148909_020--Hb_000172_420 Hb_009711_020--Hb_000030_290 Hb_002609_210 Hb_002609_210 Hb_009711_020--Hb_002609_210 Hb_001616_040 Hb_001616_040 Hb_009711_020--Hb_001616_040 Hb_000334_210 Hb_000334_210 Hb_009711_020--Hb_000334_210 Hb_002477_140 Hb_002477_140 Hb_009711_020--Hb_002477_140 Hb_009711_020--Hb_004871_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.55571 0.445259 0.668442 0.776777 1.06051 1.45332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.42935 4.91296 0.42967 1.16799 0.833779

CAGE analysis