Hb_007292_040

Information

Type -
Description -
Location Contig7292: 66967-68145
Sequence    

Annotation

kegg
ID tcc:TCM_031175
description Plastid developmental protein DAG
nr
ID XP_007021140.1
description Plastid developmental protein DAG [Theobroma cacao]
swissprot
ID Q9LPZ1
description Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana GN=MORF9 PE=1 SV=1
trembl
ID A0A061F5S0
description Plastid developmental protein DAG OS=Theobroma cacao GN=TCM_031175 PE=4 SV=1
Gene Ontology
ID GO:0009570
description dag chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007292_040 0.0 - - Plastid developmental protein DAG [Theobroma cacao]
2 Hb_000762_100 0.0004297126 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
3 Hb_001140_120 0.0007325825 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
4 Hb_001098_060 0.0015927143 - - -
5 Hb_000018_080 0.0021178953 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
6 Hb_003203_010 0.0041998951 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
7 Hb_002471_030 0.0051270866 - - PREDICTED: cyclin-J18 [Jatropha curcas]
8 Hb_014223_030 0.0055541812 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
9 Hb_088508_010 0.0063234819 - - cytochrome P450, putative [Ricinus communis]
10 Hb_014776_010 0.0068602474 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
11 Hb_007138_020 0.0078095341 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
12 Hb_001414_070 0.0079869071 - - Zinc finger protein GIS2 [Medicago truncatula]
13 Hb_004586_100 0.0087314939 - - PREDICTED: uncharacterized protein LOC105120428 isoform X2 [Populus euphratica]
14 Hb_028447_010 0.0092183719 - - hypothetical protein RCOM_1967580 [Ricinus communis]
15 Hb_001205_260 0.0107824178 - - DWNN domain isoform 2 [Theobroma cacao]
16 Hb_000245_010 0.0133638704 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
17 Hb_004669_010 0.0141371081 - - hypothetical protein JCGZ_26481 [Jatropha curcas]
18 Hb_005858_010 0.0199230559 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
19 Hb_012758_020 0.0218484773 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_001158_210 0.0240377019 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007292_040 Hb_007292_040 Hb_000762_100 Hb_000762_100 Hb_007292_040--Hb_000762_100 Hb_001140_120 Hb_001140_120 Hb_007292_040--Hb_001140_120 Hb_001098_060 Hb_001098_060 Hb_007292_040--Hb_001098_060 Hb_000018_080 Hb_000018_080 Hb_007292_040--Hb_000018_080 Hb_003203_010 Hb_003203_010 Hb_007292_040--Hb_003203_010 Hb_002471_030 Hb_002471_030 Hb_007292_040--Hb_002471_030 Hb_000762_100--Hb_001140_120 Hb_000762_100--Hb_001098_060 Hb_000762_100--Hb_000018_080 Hb_000762_100--Hb_003203_010 Hb_000762_100--Hb_002471_030 Hb_001140_120--Hb_001098_060 Hb_001140_120--Hb_000018_080 Hb_001140_120--Hb_003203_010 Hb_001140_120--Hb_002471_030 Hb_001098_060--Hb_003203_010 Hb_001098_060--Hb_000018_080 Hb_001098_060--Hb_002471_030 Hb_000018_080--Hb_002471_030 Hb_014223_030 Hb_014223_030 Hb_000018_080--Hb_014223_030 Hb_004586_100 Hb_004586_100 Hb_003203_010--Hb_004586_100 Hb_028447_010 Hb_028447_010 Hb_003203_010--Hb_028447_010 Hb_002471_030--Hb_014223_030 Hb_088508_010 Hb_088508_010 Hb_002471_030--Hb_088508_010 Hb_014776_010 Hb_014776_010 Hb_002471_030--Hb_014776_010 Hb_007138_020 Hb_007138_020 Hb_002471_030--Hb_007138_020 Hb_001414_070 Hb_001414_070 Hb_002471_030--Hb_001414_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.123425 0.238202 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis