Hb_007292_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig7292: 78023-80563
Sequence    

Annotation

kegg
ID tcc:TCM_031176
description Nbs-lrr resistance protein, putative isoform 1
nr
ID XP_012070699.1
description PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID A0A061FDZ6
description Nbs-lrr resistance protein, putative isoform 1 OS=Theobroma cacao GN=TCM_031176 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55908: 79283-79717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007292_050 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
2 Hb_114733_010 0.0894884293 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
3 Hb_005618_010 0.0911274666 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
4 Hb_000172_070 0.0965611443 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
5 Hb_173107_020 0.1056375558 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
6 Hb_010174_200 0.1070440057 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
7 Hb_002250_140 0.121119321 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
8 Hb_000365_190 0.1221318159 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
9 Hb_000638_180 0.1238518459 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
10 Hb_000270_750 0.1251209387 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
11 Hb_003435_040 0.1253114552 - - tonoplast intrinsic protein [Hevea brasiliensis]
12 Hb_000732_100 0.1254750834 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
13 Hb_001269_530 0.1277445181 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_002066_010 0.1286687368 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
15 Hb_010267_030 0.1291596393 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
16 Hb_006951_010 0.1297996142 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
17 Hb_000991_080 0.1314859597 - - kinase, putative [Ricinus communis]
18 Hb_000384_020 0.1369650523 - - sucrose phosphate syntase, putative [Ricinus communis]
19 Hb_007441_360 0.1371709962 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
20 Hb_017700_030 0.1385567106 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_007292_050 Hb_007292_050 Hb_114733_010 Hb_114733_010 Hb_007292_050--Hb_114733_010 Hb_005618_010 Hb_005618_010 Hb_007292_050--Hb_005618_010 Hb_000172_070 Hb_000172_070 Hb_007292_050--Hb_000172_070 Hb_173107_020 Hb_173107_020 Hb_007292_050--Hb_173107_020 Hb_010174_200 Hb_010174_200 Hb_007292_050--Hb_010174_200 Hb_002250_140 Hb_002250_140 Hb_007292_050--Hb_002250_140 Hb_000384_020 Hb_000384_020 Hb_114733_010--Hb_000384_020 Hb_114733_010--Hb_173107_020 Hb_000816_150 Hb_000816_150 Hb_114733_010--Hb_000816_150 Hb_017700_030 Hb_017700_030 Hb_114733_010--Hb_017700_030 Hb_000991_080 Hb_000991_080 Hb_114733_010--Hb_000991_080 Hb_000732_100 Hb_000732_100 Hb_114733_010--Hb_000732_100 Hb_005618_010--Hb_000172_070 Hb_010267_030 Hb_010267_030 Hb_005618_010--Hb_010267_030 Hb_000181_390 Hb_000181_390 Hb_005618_010--Hb_000181_390 Hb_112145_010 Hb_112145_010 Hb_005618_010--Hb_112145_010 Hb_002725_080 Hb_002725_080 Hb_005618_010--Hb_002725_080 Hb_000172_070--Hb_010267_030 Hb_005048_090 Hb_005048_090 Hb_000172_070--Hb_005048_090 Hb_000230_550 Hb_000230_550 Hb_000172_070--Hb_000230_550 Hb_002170_010 Hb_002170_010 Hb_000172_070--Hb_002170_010 Hb_173107_020--Hb_000384_020 Hb_173107_020--Hb_002250_140 Hb_173107_020--Hb_000991_080 Hb_009771_040 Hb_009771_040 Hb_173107_020--Hb_009771_040 Hb_000045_080 Hb_000045_080 Hb_173107_020--Hb_000045_080 Hb_026050_010 Hb_026050_010 Hb_010174_200--Hb_026050_010 Hb_081864_010 Hb_081864_010 Hb_010174_200--Hb_081864_010 Hb_007441_360 Hb_007441_360 Hb_010174_200--Hb_007441_360 Hb_010174_200--Hb_173107_020 Hb_010174_200--Hb_114733_010 Hb_010174_200--Hb_009771_040 Hb_002250_140--Hb_009771_040 Hb_002250_140--Hb_026050_010 Hb_000258_230 Hb_000258_230 Hb_002250_140--Hb_000258_230 Hb_007103_020 Hb_007103_020 Hb_002250_140--Hb_007103_020 Hb_002335_010 Hb_002335_010 Hb_002250_140--Hb_002335_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0152985 0.740303 0.267304 0.932937 0.00715931 0.00718298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0173594 0 0 0.0542376 0.31951

CAGE analysis