Hb_007292_060

Information

Type -
Description -
Location Contig7292: 90556-91547
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44000g
description hypothetical protein
nr
ID XP_012070700.1
description PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3C4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00762 PE=4 SV=1
Gene Ontology
ID GO:0008233
description serine protease 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55910: 90530-91717 , PASA_asmbl_55911: 90577-92784
cDNA
(Sanger)
(ID:Location)		 048_F12.ab1: 90532-91716

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007292_060 0.0 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
2 Hb_000964_120 0.0573417555 - - DNA-damage-inducible protein f, putative [Ricinus communis]
3 Hb_002326_090 0.0586306958 - - amino acid transporter, putative [Ricinus communis]
4 Hb_090210_010 0.0632214464 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
5 Hb_000175_600 0.0694948519 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
6 Hb_004102_180 0.0707483481 - - zinc finger family protein [Populus trichocarpa]
7 Hb_011218_010 0.0727867752 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
8 Hb_136944_010 0.0830232444 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
9 Hb_001898_030 0.0840810667 - - protein kinase-coding resistance protein [Nicotiana repanda]
10 Hb_006603_010 0.0846432321 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
11 Hb_069384_010 0.0890365892 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
12 Hb_000731_180 0.0893814763 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
13 Hb_001006_300 0.0908275984 - - lipid binding protein, putative [Ricinus communis]
14 Hb_003197_050 0.092696252 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
15 Hb_000155_030 0.0944871121 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
16 Hb_003152_010 0.0959566703 - - -
17 Hb_017061_010 0.097353939 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
18 Hb_116349_080 0.0985306121 - - Nectarin-1 precursor, putative [Ricinus communis]
19 Hb_010608_040 0.0985735001 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
20 Hb_004732_080 0.1010276729 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]

Gene co-expression network

sample Hb_007292_060 Hb_007292_060 Hb_000964_120 Hb_000964_120 Hb_007292_060--Hb_000964_120 Hb_002326_090 Hb_002326_090 Hb_007292_060--Hb_002326_090 Hb_090210_010 Hb_090210_010 Hb_007292_060--Hb_090210_010 Hb_000175_600 Hb_000175_600 Hb_007292_060--Hb_000175_600 Hb_004102_180 Hb_004102_180 Hb_007292_060--Hb_004102_180 Hb_011218_010 Hb_011218_010 Hb_007292_060--Hb_011218_010 Hb_000964_120--Hb_002326_090 Hb_001006_300 Hb_001006_300 Hb_000964_120--Hb_001006_300 Hb_003197_050 Hb_003197_050 Hb_000964_120--Hb_003197_050 Hb_000964_120--Hb_011218_010 Hb_000964_120--Hb_090210_010 Hb_002326_090--Hb_000175_600 Hb_002326_090--Hb_090210_010 Hb_002326_090--Hb_004102_180 Hb_001898_030 Hb_001898_030 Hb_002326_090--Hb_001898_030 Hb_153258_030 Hb_153258_030 Hb_090210_010--Hb_153258_030 Hb_000731_180 Hb_000731_180 Hb_090210_010--Hb_000731_180 Hb_000796_110 Hb_000796_110 Hb_090210_010--Hb_000796_110 Hb_002999_020 Hb_002999_020 Hb_090210_010--Hb_002999_020 Hb_000175_600--Hb_004102_180 Hb_136944_010 Hb_136944_010 Hb_000175_600--Hb_136944_010 Hb_000175_600--Hb_011218_010 Hb_000175_600--Hb_000964_120 Hb_069384_010 Hb_069384_010 Hb_004102_180--Hb_069384_010 Hb_004102_180--Hb_011218_010 Hb_007290_010 Hb_007290_010 Hb_004102_180--Hb_007290_010 Hb_011218_010--Hb_069384_010 Hb_011218_010--Hb_002326_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.91566 15.7669 113.929 0.281197 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.05494 5.59581

CAGE analysis