Hb_007295_020

Information

Type -
Description -
Location Contig7295: 48255-48671
Sequence    

Annotation

kegg
ID tcc:TCM_034658
description hypothetical protein
nr
ID XP_007018435.1
description Uncharacterized protein TCM_034658 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FEE8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_034658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007295_020 0.0 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
2 Hb_016564_050 0.0586965533 - - -
3 Hb_001277_380 0.068560973 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]
4 Hb_145080_010 0.1126796248 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
5 Hb_112791_030 0.1172815313 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
6 Hb_125181_010 0.1313058395 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
7 Hb_094437_030 0.1445709707 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
8 Hb_006351_120 0.1452804644 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
9 Hb_003714_030 0.1465357794 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
10 Hb_011358_010 0.1504912574 - - -
11 Hb_007590_030 0.156093468 - - PREDICTED: iridoid synthase [Jatropha curcas]
12 Hb_000207_240 0.1563069633 - - hypothetical protein RCOM_0686540 [Ricinus communis]
13 Hb_027472_190 0.1585940685 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
14 Hb_011432_010 0.1626039594 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
15 Hb_012077_010 0.1629816148 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
16 Hb_044380_010 0.1631271004 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
17 Hb_001396_130 0.1639155896 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000856_210 0.1677388048 - - nitrate transporter, putative [Ricinus communis]
19 Hb_006807_010 0.1714384409 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
20 Hb_002876_280 0.1740595718 - - hypothetical protein RCOM_0686540 [Ricinus communis]

Gene co-expression network

sample Hb_007295_020 Hb_007295_020 Hb_016564_050 Hb_016564_050 Hb_007295_020--Hb_016564_050 Hb_001277_380 Hb_001277_380 Hb_007295_020--Hb_001277_380 Hb_145080_010 Hb_145080_010 Hb_007295_020--Hb_145080_010 Hb_112791_030 Hb_112791_030 Hb_007295_020--Hb_112791_030 Hb_125181_010 Hb_125181_010 Hb_007295_020--Hb_125181_010 Hb_094437_030 Hb_094437_030 Hb_007295_020--Hb_094437_030 Hb_016564_050--Hb_001277_380 Hb_016564_050--Hb_145080_010 Hb_016564_050--Hb_094437_030 Hb_016564_050--Hb_112791_030 Hb_006351_120 Hb_006351_120 Hb_016564_050--Hb_006351_120 Hb_001277_380--Hb_145080_010 Hb_006355_070 Hb_006355_070 Hb_001277_380--Hb_006355_070 Hb_038833_010 Hb_038833_010 Hb_001277_380--Hb_038833_010 Hb_001277_380--Hb_112791_030 Hb_145080_010--Hb_112791_030 Hb_011358_010 Hb_011358_010 Hb_145080_010--Hb_011358_010 Hb_011432_010 Hb_011432_010 Hb_145080_010--Hb_011432_010 Hb_037519_010 Hb_037519_010 Hb_145080_010--Hb_037519_010 Hb_002973_130 Hb_002973_130 Hb_145080_010--Hb_002973_130 Hb_112791_030--Hb_011358_010 Hb_112791_030--Hb_011432_010 Hb_112791_030--Hb_037519_010 Hb_112791_030--Hb_002973_130 Hb_001221_250 Hb_001221_250 Hb_125181_010--Hb_001221_250 Hb_019925_010 Hb_019925_010 Hb_125181_010--Hb_019925_010 Hb_000193_090 Hb_000193_090 Hb_125181_010--Hb_000193_090 Hb_007590_030 Hb_007590_030 Hb_125181_010--Hb_007590_030 Hb_044380_010 Hb_044380_010 Hb_125181_010--Hb_044380_010 Hb_125181_010--Hb_006351_120 Hb_027472_190 Hb_027472_190 Hb_094437_030--Hb_027472_190 Hb_090390_010 Hb_090390_010 Hb_094437_030--Hb_090390_010 Hb_000392_490 Hb_000392_490 Hb_094437_030--Hb_000392_490 Hb_001396_130 Hb_001396_130 Hb_094437_030--Hb_001396_130 Hb_000309_070 Hb_000309_070 Hb_094437_030--Hb_000309_070 Hb_003714_030 Hb_003714_030 Hb_094437_030--Hb_003714_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.315112 0 1.03722 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.492254 1.54662

CAGE analysis