Hb_007304_020

Information

Type -
Description -
Location Contig7304: 28947-55914
Sequence    

Annotation

kegg
ID vvi:100256879
description uncharacterized LOC100256879
nr
ID XP_010665279.1
description PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
swissprot
ID Q6Z8L2
description Putative laccase-9 OS=Oryza sativa subsp. japonica GN=LAC9 PE=3 SV=1
trembl
ID B9SFL6
description Laccase OS=Ricinus communis GN=RCOM_0647130 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-14-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007304_020 0.0 - - PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
2 Hb_059502_010 0.0700469299 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
3 Hb_046204_010 0.0804814175 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
4 Hb_010589_090 0.0915680236 - - Snakin-1 [Glycine soja]
5 Hb_000531_010 0.0924437164 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
6 Hb_033312_100 0.0945946076 - - -
7 Hb_001247_060 0.0995116041 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000089_090 0.1084622329 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
9 Hb_001504_250 0.1105589281 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_045150_010 0.1105845132 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
11 Hb_001456_010 0.110594652 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_121058_010 0.1106599438 - - ATP binding protein, putative [Ricinus communis]
13 Hb_185246_010 0.1106625457 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
14 Hb_003529_020 0.1107036065 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
15 Hb_104011_010 0.1107681591 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
16 Hb_002490_070 0.1107741197 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
17 Hb_009225_030 0.1108097122 - - ring finger protein, putative [Ricinus communis]
18 Hb_000272_060 0.1108355639 - - unnamed protein product [Vitis vinifera]
19 Hb_000012_360 0.1109064543 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
20 Hb_002759_210 0.1110695517 - - Peroxidase 6 precursor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007304_020 Hb_007304_020 Hb_059502_010 Hb_059502_010 Hb_007304_020--Hb_059502_010 Hb_046204_010 Hb_046204_010 Hb_007304_020--Hb_046204_010 Hb_010589_090 Hb_010589_090 Hb_007304_020--Hb_010589_090 Hb_000531_010 Hb_000531_010 Hb_007304_020--Hb_000531_010 Hb_033312_100 Hb_033312_100 Hb_007304_020--Hb_033312_100 Hb_001247_060 Hb_001247_060 Hb_007304_020--Hb_001247_060 Hb_059502_010--Hb_000531_010 Hb_004598_020 Hb_004598_020 Hb_059502_010--Hb_004598_020 Hb_059502_010--Hb_033312_100 Hb_180864_010 Hb_180864_010 Hb_059502_010--Hb_180864_010 Hb_059502_010--Hb_001247_060 Hb_001384_030 Hb_001384_030 Hb_046204_010--Hb_001384_030 Hb_074674_010 Hb_074674_010 Hb_046204_010--Hb_074674_010 Hb_046204_010--Hb_033312_100 Hb_000422_040 Hb_000422_040 Hb_046204_010--Hb_000422_040 Hb_000138_120 Hb_000138_120 Hb_046204_010--Hb_000138_120 Hb_003784_030 Hb_003784_030 Hb_010589_090--Hb_003784_030 Hb_001021_190 Hb_001021_190 Hb_010589_090--Hb_001021_190 Hb_168451_010 Hb_168451_010 Hb_010589_090--Hb_168451_010 Hb_053224_010 Hb_053224_010 Hb_010589_090--Hb_053224_010 Hb_011515_020 Hb_011515_020 Hb_010589_090--Hb_011515_020 Hb_032907_020 Hb_032907_020 Hb_010589_090--Hb_032907_020 Hb_002025_280 Hb_002025_280 Hb_000531_010--Hb_002025_280 Hb_000531_010--Hb_033312_100 Hb_002766_070 Hb_002766_070 Hb_000531_010--Hb_002766_070 Hb_000531_010--Hb_180864_010 Hb_085600_010 Hb_085600_010 Hb_000531_010--Hb_085600_010 Hb_033312_100--Hb_002025_280 Hb_033312_100--Hb_002766_070 Hb_033312_100--Hb_000422_040 Hb_000089_090 Hb_000089_090 Hb_001247_060--Hb_000089_090 Hb_012092_040 Hb_012092_040 Hb_001247_060--Hb_012092_040 Hb_000035_230 Hb_000035_230 Hb_001247_060--Hb_000035_230 Hb_001247_060--Hb_000531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.148813 0.160093 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0076684 0

CAGE analysis