Hb_007304_110

Information

Type -
Description -
Location Contig7304: 135776-147208
Sequence    

Annotation

kegg
ID csv:101220281
description type I inositol 1,4,5-trisphosphate 5-phosphatase 1-like
nr
ID XP_012086027.1
description PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
swissprot
ID Q84MA2
description Type I inositol 1,4,5-trisphosphate 5-phosphatase 1 OS=Arabidopsis thaliana GN=IP5P1 PE=1 SV=2
trembl
ID A0A067K319
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22273 PE=4 SV=1
Gene Ontology
ID GO:0046856
description type i inositol -trisphosphate 5-phosphatase 1 isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55936: 136497-147169 , PASA_asmbl_55937: 139331-147169 , PASA_asmbl_55938: 139475-139765
cDNA
(Sanger)
(ID:Location)		 030_P03.ab1: 136497-138883

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007304_110 0.0 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
2 Hb_000363_460 0.0941157052 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_007943_100 0.0999574622 - - unnamed protein product [Coffea canephora]
4 Hb_000358_150 0.1003283488 - - hypothetical protein VITISV_012309 [Vitis vinifera]
5 Hb_001136_100 0.1021805668 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
6 Hb_001322_170 0.1051783675 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
7 Hb_001136_090 0.1059899043 - - Protein PNS1, putative [Ricinus communis]
8 Hb_000723_260 0.1061893665 - - ethylene insensitive protein, putative [Ricinus communis]
9 Hb_012132_030 0.1079034482 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
10 Hb_000463_140 0.1092753972 - - Poly(rC)-binding protein, putative [Ricinus communis]
11 Hb_003001_150 0.1094883567 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_048476_170 0.1102670665 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
13 Hb_000796_220 0.111230803 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
14 Hb_000041_280 0.1114842998 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
15 Hb_000946_120 0.1121238308 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000514_060 0.1123548886 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
17 Hb_000313_260 0.1133801796 - - auxin:hydrogen symporter, putative [Ricinus communis]
18 Hb_000997_210 0.1136517823 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
19 Hb_000739_310 0.1142210954 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
20 Hb_001369_420 0.11780629 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]

Gene co-expression network

sample Hb_007304_110 Hb_007304_110 Hb_000363_460 Hb_000363_460 Hb_007304_110--Hb_000363_460 Hb_007943_100 Hb_007943_100 Hb_007304_110--Hb_007943_100 Hb_000358_150 Hb_000358_150 Hb_007304_110--Hb_000358_150 Hb_001136_100 Hb_001136_100 Hb_007304_110--Hb_001136_100 Hb_001322_170 Hb_001322_170 Hb_007304_110--Hb_001322_170 Hb_001136_090 Hb_001136_090 Hb_007304_110--Hb_001136_090 Hb_000363_460--Hb_001136_100 Hb_004117_100 Hb_004117_100 Hb_000363_460--Hb_004117_100 Hb_000363_460--Hb_001136_090 Hb_048476_170 Hb_048476_170 Hb_000363_460--Hb_048476_170 Hb_002367_130 Hb_002367_130 Hb_000363_460--Hb_002367_130 Hb_000768_190 Hb_000768_190 Hb_007943_100--Hb_000768_190 Hb_028639_010 Hb_028639_010 Hb_007943_100--Hb_028639_010 Hb_003001_150 Hb_003001_150 Hb_007943_100--Hb_003001_150 Hb_000037_110 Hb_000037_110 Hb_007943_100--Hb_000037_110 Hb_002150_030 Hb_002150_030 Hb_007943_100--Hb_002150_030 Hb_000059_150 Hb_000059_150 Hb_007943_100--Hb_000059_150 Hb_001252_080 Hb_001252_080 Hb_000358_150--Hb_001252_080 Hb_001369_420 Hb_001369_420 Hb_000358_150--Hb_001369_420 Hb_000676_110 Hb_000676_110 Hb_000358_150--Hb_000676_110 Hb_001493_030 Hb_001493_030 Hb_000358_150--Hb_001493_030 Hb_000933_090 Hb_000933_090 Hb_000358_150--Hb_000933_090 Hb_000051_070 Hb_000051_070 Hb_000358_150--Hb_000051_070 Hb_001136_100--Hb_001136_090 Hb_001136_100--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_100--Hb_012132_030 Hb_001136_100--Hb_003001_150 Hb_000207_310 Hb_000207_310 Hb_001136_100--Hb_000207_310 Hb_001243_040 Hb_001243_040 Hb_001322_170--Hb_001243_040 Hb_000313_260 Hb_000313_260 Hb_001322_170--Hb_000313_260 Hb_018133_040 Hb_018133_040 Hb_001322_170--Hb_018133_040 Hb_001696_010 Hb_001696_010 Hb_001322_170--Hb_001696_010 Hb_001632_040 Hb_001632_040 Hb_001322_170--Hb_001632_040 Hb_000041_280 Hb_000041_280 Hb_001136_090--Hb_000041_280 Hb_001136_090--Hb_002367_130 Hb_001136_090--Hb_012132_030 Hb_001502_060 Hb_001502_060 Hb_001136_090--Hb_001502_060 Hb_000072_350 Hb_000072_350 Hb_001136_090--Hb_000072_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93122 3.26939 3.17685 3.3075 14.7885 7.9605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90334 4.54689 10.0622 3.99902 4.97225

CAGE analysis