Hb_007305_010

Information

Type -
Description -
Location Contig7305: 5316-14718
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03870g
description hypothetical protein
nr
ID XP_012086762.1
description PREDICTED: girdin-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0K5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20485 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55944: 5344-14790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007305_010 0.0 - - PREDICTED: girdin-like [Jatropha curcas]
2 Hb_001226_180 0.0773595139 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
3 Hb_003125_060 0.08765884 - - PREDICTED: snurportin-1 [Jatropha curcas]
4 Hb_033594_020 0.0931221583 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
5 Hb_000236_280 0.093664375 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
6 Hb_000025_750 0.0948859394 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
7 Hb_000104_080 0.0956443792 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
8 Hb_004241_070 0.0959358804 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
9 Hb_000540_140 0.0974213156 - - zinc binding dehydrogenase, putative [Ricinus communis]
10 Hb_001408_090 0.0980284822 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
11 Hb_000181_310 0.0991893906 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
12 Hb_005725_070 0.0996520366 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002675_040 0.0996581205 - - ran-binding protein, putative [Ricinus communis]
14 Hb_027405_020 0.100490785 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
15 Hb_023020_060 0.1014623562 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
16 Hb_001975_020 0.1014650605 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
17 Hb_004143_070 0.1020701493 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000230_370 0.1031399358 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
19 Hb_000345_530 0.1039193823 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
20 Hb_073171_080 0.1044448886 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007305_010 Hb_007305_010 Hb_001226_180 Hb_001226_180 Hb_007305_010--Hb_001226_180 Hb_003125_060 Hb_003125_060 Hb_007305_010--Hb_003125_060 Hb_033594_020 Hb_033594_020 Hb_007305_010--Hb_033594_020 Hb_000236_280 Hb_000236_280 Hb_007305_010--Hb_000236_280 Hb_000025_750 Hb_000025_750 Hb_007305_010--Hb_000025_750 Hb_000104_080 Hb_000104_080 Hb_007305_010--Hb_000104_080 Hb_018663_020 Hb_018663_020 Hb_001226_180--Hb_018663_020 Hb_002400_180 Hb_002400_180 Hb_001226_180--Hb_002400_180 Hb_004678_060 Hb_004678_060 Hb_001226_180--Hb_004678_060 Hb_003656_160 Hb_003656_160 Hb_001226_180--Hb_003656_160 Hb_001969_040 Hb_001969_040 Hb_001226_180--Hb_001969_040 Hb_004310_060 Hb_004310_060 Hb_001226_180--Hb_004310_060 Hb_002133_030 Hb_002133_030 Hb_003125_060--Hb_002133_030 Hb_000685_080 Hb_000685_080 Hb_003125_060--Hb_000685_080 Hb_027405_020 Hb_027405_020 Hb_003125_060--Hb_027405_020 Hb_000487_100 Hb_000487_100 Hb_003125_060--Hb_000487_100 Hb_023020_060 Hb_023020_060 Hb_003125_060--Hb_023020_060 Hb_002675_040 Hb_002675_040 Hb_033594_020--Hb_002675_040 Hb_046615_020 Hb_046615_020 Hb_033594_020--Hb_046615_020 Hb_000343_210 Hb_000343_210 Hb_033594_020--Hb_000343_210 Hb_007885_070 Hb_007885_070 Hb_033594_020--Hb_007885_070 Hb_033594_020--Hb_003656_160 Hb_017895_020 Hb_017895_020 Hb_033594_020--Hb_017895_020 Hb_004241_070 Hb_004241_070 Hb_000236_280--Hb_004241_070 Hb_000236_280--Hb_000104_080 Hb_073171_080 Hb_073171_080 Hb_000236_280--Hb_073171_080 Hb_000088_200 Hb_000088_200 Hb_000236_280--Hb_000088_200 Hb_004044_020 Hb_004044_020 Hb_000236_280--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000236_280--Hb_004525_100 Hb_001227_110 Hb_001227_110 Hb_000025_750--Hb_001227_110 Hb_000849_150 Hb_000849_150 Hb_000025_750--Hb_000849_150 Hb_001408_090 Hb_001408_090 Hb_000025_750--Hb_001408_090 Hb_000692_170 Hb_000692_170 Hb_000025_750--Hb_000692_170 Hb_000093_130 Hb_000093_130 Hb_000025_750--Hb_000093_130 Hb_002025_140 Hb_002025_140 Hb_000025_750--Hb_002025_140 Hb_000923_040 Hb_000923_040 Hb_000104_080--Hb_000923_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_001584_290 Hb_001584_290 Hb_000104_080--Hb_001584_290 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_023001_020 Hb_023001_020 Hb_000104_080--Hb_023001_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.9789 17.5897 12.3183 6.92363 58.1775 36.9599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2434 9.6876 13.563 12.2852 10.022

CAGE analysis